Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2177 131 2e-25 seq1319 102 8e-17 seq188 102 8e-17 seq157 89.7 5e-13 seq1915 86.0 6e-12 seq942 86.0 6e-12 >seq2177 Length=17275 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | ||||||| |||||||| |||||||| Sbjct 4427 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 4368 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||||||||||| | || ||||| || || || || || Sbjct 4367 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 4308 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| ||| ||||| ||| || | ||| |||| ||||| || Sbjct 4307 ATACCTTCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACT 4248 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| |||||||| |||||||| ||||| Sbjct 4247 TCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||| ||| | ||||||| ||||||||||| || || | ||||| ||| || Sbjct 3953 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCA 3894 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| || | | || ||||| || ||||| || || || ||||||||||| || Sbjct 3893 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTC-TTG 3835 Query 138526 ATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | |||||| ||||| ||| || | ||||||| || || || || | || | || || Sbjct 3834 AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTT 3775 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || ||||| || || || |||||| Sbjct 3774 TCCGGTAAGGGTTTTAACGAAGATTTGCATG 3744 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || ||||| ||||| || || | |||||| || || | ||| ||||| | Sbjct 4624 TTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAG 4565 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || | ||| || || || ||||| ||||| ||||| || ||| |||| |||||| Sbjct 4564 CGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT-TGAATTTTGGTTTTA 4506 Query 138539 AT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | || || | ||| || | || || ||||| | || | ||| |||||||| || ||| Sbjct 4505 ACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTT 4446 Query 138598 TTTACAAAAATCTGCAT 138614 ||||||||||| ||||| Sbjct 4445 TTTACAAAAATTTGCAT 4429 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | || || |||||||| ||||||||| Sbjct 4199 CCACCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 4140 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||||||||| | | || ||||| || ||||| || || Sbjct 4139 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 4080 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| |||| | ||||| ||| || | ||| || | ||||| || Sbjct 4079 ATACCCTCCTTATC-TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 4021 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || ||||| || || ||||| Sbjct 4020 GTCCAAGGTGATGGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 >seq1319 Length=24104 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | || | ||| | ||||||| ||||| || ||||| || | Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||||| | |||| | || || || ||||| || Sbjct 16774 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 16715 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| | || | ||||| ||| || | ||| || | ||||| || Sbjct 16714 ATGCCTTCTTTGTC-TTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 16656 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || ||||| || || ||||| ||||| Sbjct 16655 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq188 Length=104369 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || ||||| | || || |||| |||| || |||||||| ||||| ||| Sbjct 83290 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 83231 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | | ||| || || | |||||||| | | | |||| ||| ||||| ||||| || Sbjct 83230 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 83171 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||||||| ||| | || || | ||| ||| | || || Sbjct 83170 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 83111 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||||||||| || ||||| |||||||| |||||| Sbjct 83110 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 83062 >seq157 Length=142614 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||||||||| || ||||| | |||||| || || | ||||||||||| Sbjct 37370 TTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGG 37311 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| | || ||||| || || || |||||||| || || ||| | |||| |||| Sbjct 37310 CGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATC-TTGAATCTTTGCTTTA 37252 Query 138539 A-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | ||| || | ||| || | ||||| || || | || | |||||||| || || || Sbjct 37251 ACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTC 37192 Query 138598 TTTACAAAAAT 138608 || || ||||| Sbjct 37191 TTGACGAAAAT 37181 >seq1915 Length=14346 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 154341 GCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCA 154400 ||||| ||||| | |||| ||||| ||| ||||| || || ||||||||||| Sbjct 10959 GCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAAGTTTCAATAGCAGCTTCGATATCA 11018 Query 154401 TCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTA 154460 || |||||||| || | ||| |||||||| ||||| || || ||||| || || ||| Sbjct 11019 TCTCCGTGAATCCCAACCGCTACGCGCATAAGCATATGTTGGGGACGCTCAGCAACT--- 11075 Query 154461 TTGTCA-ATCTTC--AAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTAT 154517 || || | ||| || ||||| |||| || ||||| | || ||||| || ||| Sbjct 11076 TTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTTTTAAATCCAAAATAATTATAT 11135 Query 154518 TCAAAATCT 154526 | | ||||| Sbjct 11136 TTATAATCT 11144 >seq942 Length=78137 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 || |||||||||| | ||||| | || ||||| || || | |||||| || Sbjct 25456 AATACTAAATGTAGCGTGGACTCATCACATATATTGTAATCACTTAAAGTACGGCCATCT 25397 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || ||||| ||||| | | | |||| | ||||| || || |||||||||||||| || Sbjct 25396 TCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGTATACCTTCTTTTTCA 25337 Query 138523 GTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582 || |||||| ||||||||| || | || || | |||| || || | || | ||| Sbjct 25336 GTAATTTTTGTTTTTAATTGATCAATTGTATCACTAAACTCGACTTCAATTGTTATAGTT 25277 Query 138583 TTACCAGTCAGAGTTTTTAC 138602 || ||||| | ||||| || Sbjct 25276 TTTCCAGTTAATGTTTTAAC 25257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496192495237680