Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq188 150 1e-31 seq2177 111 1e-19 seq157 95.1 9e-15 seq1319 86.0 4e-12 >seq188 Length=104369 Score = 150 bits (166), Expect = 1e-31 Identities = 184/248 (74%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || || | | || || || | || || |||||||| || ||||||||| Sbjct 83290 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCG-- 83233 Query 15009 GAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || | | || | |||||||| ||||| ||||| |||| ||||| ||||| || Sbjct 83232 GAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGG 83173 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 || |||||||| || || |||||| ||| || | || || ||||||||| |||| Sbjct 83172 GGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCA 83113 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATA 15186 || ||||| |||||||||||||| || || ||||| |||||||||||||| ||| ||| | Sbjct 83112 ACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTT-AAAAA 83054 Query 15187 AATTTTTT 15194 ||||| || Sbjct 83053 AATTTATT 83046 >seq2177 Length=17275 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| |||||| || || |||||||| ||||| ||||| ||| | | ||||||| Sbjct 3953 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCA 3894 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||||||| | || | ||| || ||||| ||||||||||| ||||| | Sbjct 3893 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 3834 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| || || ||||| ||| | ||| || || | ||| || || || Sbjct 3833 ATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTT 3774 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||||||| Sbjct 3773 CCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| ||||| ||||| ||| | | | ||||| ||||| Sbjct 4631 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 4572 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | |||||||| || || || || || || || || || ||||||| Sbjct 4571 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTG 4512 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||| || || || ||||| ||| || || | |||||| || ||||| || Sbjct 4511 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 4452 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || ||||||||||||||||||||| Sbjct 4451 AGTGTTTTTACAAAAATTTGCATA 4428 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || |||||||| || ||||| || || ||| | || || Sbjct 4409 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 4350 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || ||| | || | ||| || || || ||||| ||||| ||||| Sbjct 4349 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGG 4290 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||||||| || || || |||||| | || || || || ||||||||||| Sbjct 4289 ATCTTTGCTTTT-ACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 4231 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| ||||||||||||||| Sbjct 4230 TCCAGTGAGAGTTTTAACAAAAATTTGCATA 4200 >seq157 Length=142614 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| |||||||| || || ||||| | | | | | ||||| ||||| Sbjct 37606 ATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTG 37547 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||| |||||| | ||||| || || || || ||||| |||||||| || ||| || Sbjct 37546 TTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTT 37487 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 |||||| || ||||| ||||| || || || | |||||| |||||||| | Sbjct 37486 TGCTTTA-ACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGG 37428 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || |||||||||||| Sbjct 37427 TGAGGGTCTTGACGAAAATTTGCATA 37402 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| || || ||||| || Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATC--TG 36660 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| |||||||| |||||| | || || || ||||| || | Sbjct 36659 ACAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAG 36600 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||||||||||| || ||| |||||||| || || || ||||| | || Sbjct 36599 GAATTCCTTCCTTATCTTGAATCTTTGCTTTA-ACTTGATCAATGGTATCATTGGACTCG 36541 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | |||||||||||| || || || || || || || ||||||||| Sbjct 36540 ACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 36490 >seq1319 Length=24104 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| || |||||||| || Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATC--TG 16777 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| |||||||| || || | ||||| || || || || | Sbjct 16776 ACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGG 16717 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| ||||| ||| || ||| || || || ||||| |||| Sbjct 16716 GAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTA 16657 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||| |||||||| || ||||| || || |||||||||||| Sbjct 16656 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 16607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357342915447665