Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq188 123 2e-23 seq2177 111 1e-19 seq157 107 2e-18 seq1319 104 2e-17 seq97 82.4 7e-11 >seq188 Length=104369 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||||||||| || | ||||| |||| || || ||||||||||||||||||||| Sbjct 83289 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 83230 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | | || ||| |||| |||||| ||||| | || || || || ||||| || || Sbjct 83229 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 83170 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || ||||| | |||| || |||| ||| || |||| || ||| Sbjct 83169 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 83110 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||||| || || || ||||| |||||||| |||||| Sbjct 83109 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 83062 >seq2177 Length=17275 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||||||| | || |||||||||||||||||||| || Sbjct 4427 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 4368 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || ||||| || ||| | || | || |||||||| || || Sbjct 4367 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 4308 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| || ||| || | ||| |||| ||| || | | ||| || Sbjct 4307 ATACCTTCTTTGTCTTGGATCTT-TGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 4249 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| |||||||| ||||| Sbjct 4248 TTCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||||||||||||||| ||| | || || ||| || || ||||| ||| Sbjct 4169 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 4110 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || ||||| || || || || |||||||| || ||||| || Sbjct 4109 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 4050 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | ||| |||| ||| |||| ||| || || | ||| | ||||||||||| || || Sbjct 4049 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGCGTC 3990 Query 127097 TTTACAAAAATCTGCAT 127113 ||||| || || ||||| Sbjct 3989 TTTACGAAGATTTGCAT 3973 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | ||| | || | ||| | || |||||||||||||| || ||||| Sbjct 3971 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAG 3912 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || ||||| |||||| | || | || ||||| || || || Sbjct 3911 AGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 3852 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||| | ||| ||| ||| || | ||| || | ||||| | | || || Sbjct 3851 ATTCCTTCTTTGT-CTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 3793 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | ||| | || || ||||| || ||||| || || || |||||| Sbjct 3792 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 3744 >seq157 Length=142614 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| |||||||||||||| ||||| | || ||| ||| || | ||||| ||| Sbjct 37599 GTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCA 37540 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| ||||||| || |||||||| ||||| || || ||||| | | ||| | | ||| || Sbjct 37539 GCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTAT-CTTGAATCTTTGCTTT 37481 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||| || | ||| || | ||| ||||| | ||| | ||||| ||||| || || Sbjct 37480 AACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGT 37421 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 37420 CTTGACGAAAATTTGCAT 37403 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||| || | || | ||| | || || |||||||||||||| ||||| | Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 36658 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||| |||||| |||| || || || ||||| ||||| Sbjct 36657 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 36598 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| | | ||| | | ||| || | ||| || | ||| || | |||||| Sbjct 36597 ATTCCTTCCTTAT-CTTGAATCTTTGCTTTAACTTGATCAATGGTATCATTGGACTCGAC 36539 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || || || || || || || || ||||| Sbjct 36538 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 >seq1319 Length=24104 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||| || | ||| | ||| | || ||||||||||| ||||||||||| | Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||| || || ||||||| || |||||||| || || Sbjct 16774 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 16715 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || ||||| || ||| || | ||| || | ||| || | ||| ||| Sbjct 16714 ATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACT 16655 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| ||||| || || ||||| ||||| Sbjct 16654 TCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || |||||| ||||| | ||||||| || ||||| ||||| || || || ||||| | Sbjct 16985 TACCTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCT-T 16927 Query 127024 GATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || | | || ||||| |||||| | || || | | || ||||| | || | |||| Sbjct 16926 GAATCTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTT 16867 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| || || ||||||||||||||||| Sbjct 16866 TCCCGGTGAGGGTCTTTACAAAAATCTGCAT 16836 >seq97 Length=146771 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 |||||| || ||||| ||||| | || || || ||| |||| ||| ||||||| | Sbjct 24417 CTCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGTCTTCCAGCAAA 24358 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 || || || || || ||||| || || |||||||| ||| || || | | | Sbjct 24357 AATAAAACGTTGACTATTAGGAGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTAG 24298 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || ||| || | ||| || || | ||| |||||||| ||||| || |||||||| Sbjct 24297 GCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTAC 24238 Query 127102 AAAAATCTGCATGGC 127116 ||| | ||||||||| Sbjct 24237 AAATACCTGCATGGC 24223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475433819768560