Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2177 114 3e-20 seq1319 111 4e-19 >seq2177 Length=17275 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || || || ||||| ||||| | |||||||||| | || Sbjct 4421 CGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTT 4362 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || || || |||||||| |||||||| ||||| || || ||| ||| Sbjct 4361 CGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCT 4302 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || |||||| || || |||| ||| || | | || || ||||| Sbjct 4301 TCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAA 4242 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| ||||||||||| Sbjct 4241 GTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTG 4204 Score = 109 bits (120), Expect = 1e-18 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| || || ||||||| ||| || || | | ||| | |||||| Sbjct 4640 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 4581 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || ||||| || | ||| ||||| || ||| || || ||| || Sbjct 4580 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 4521 Query 199538 TGAATCTTTTGCTTCA--CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||||| ||| | || | | ||| | | ||| || | || ||| || || | || |||| Sbjct 4520 TGAAT-TTTGGTTTTAACCTGAT-CAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 4463 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||| || || ||||| ||||||||||| Sbjct 4462 TCTTACCAGTAAGTGTTTTTACAAAAATTTG 4432 >seq1319 Length=24104 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || |||||||| ||||| ||||||| ||||| || | ||| || | ||||||| Sbjct 16819 AGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 16760 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || ||||| ||||| | || ||||| ||||| ||| |||||| || Sbjct 16759 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCT 16700 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || || | ||| |||| | ||||| || | || || || Sbjct 16699 TGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTT 16640 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || |||||||| Sbjct 16639 TTACCGGTAAGAGTCTTAACGAAAATTTG 16611 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| ||||| ||||| ||||||| || ||||| | |||||| | ||||||| Sbjct 16591 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 16532 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || || |||||||| | || ||||| || ||| ||| ||| Sbjct 16531 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 16481 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| ||||||||||| | |||||| |||| || || |||| ||| Sbjct 16509 ATCTTCGCTGGTAAACAGCTGGAAGATGGACGTACTTTGTCCGACTATAATATCCAAAAA 16568 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| ||||||||||||||| Sbjct 16569 GAGTCAACTCTTCACCTTGTT 16589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178751382510023