Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2177 87.8 2e-12 >seq2177 Length=17275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/221 (69%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | ||| ||| ||||| ||||||||||| || || || || | Sbjct 4416 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 4357 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || || || |||||||| || | || ||||| || | || | | || || Sbjct 4356 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 4297 Query 46498 GTCCATGATCTT--CTT---CTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACC 46552 ||| |||||| ||| ||||| || | || ||| || || || |||| Sbjct 4296 GTCTTGGATCTTTGCTTTTACTTGATCG-----ATGGTATCGGAAGACTCAACTTCCAAA 4242 Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || ||||||||||| |||||||| Sbjct 4241 GTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565158779105880