Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1319 116 3e-21 seq157 89.7 4e-13 seq2177 87.8 1e-12 >seq1319 Length=24104 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || || | ||| | ||| |||||||| ||||| ||||| | | Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||||||||| ||| |||| || || || |||||||||| ||| Sbjct 16774 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 16715 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || ||||| | | | | | || |||| | || || Sbjct 16714 ATGCCTTCTTTGTCTTGAATCTTCGCTTTAA-CTTGGTCAATGGTATCTGAGGACTCTAC 16656 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| |||||||| || | ||| || ||||| || ||||| Sbjct 16655 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq157 Length=142614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| | ||| | ||| ||||||||| ||||||||||| | Sbjct 37629 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 37570 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| || | || || || || |||||||| | || Sbjct 37569 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 37510 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || ||| ||||| | | | ||| || || | | || || Sbjct 37509 ATACCTTCCTTATCTTGAATCTTTGCTTTAA-CTTGGTCTATGGTATCAGAGGACTCAAC 37451 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||||||||||| || | || || ||||| || ||||| Sbjct 37450 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 >seq2177 Length=17275 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTT--TCTTTTTGTATATTATAATCGG 39550 || || || | ||| || |||||||| ||||| | |||||||| ||||| || || | Sbjct 4427 CCACCACGAAGACGAAGCACCAAATG--AAGTGTTGACTCTTTTTGAATATTGTAGTCAG 4370 Query 39551 CCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 ||| | ||| |||| || | |||||| ||| | ||||| | ||| |||||||| | Sbjct 4369 --AAAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGG 4312 Query 39609 GGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCG-TCGCTACTGTGTCTGCGCT 39665 ||| | ||||||||||| | || ||| | |||| | | ||| | || || | Sbjct 4311 GGGAATACCTTCTTTGTCTTGGATCTTTGCT-TTTACTTGATCG--ATGGTATCGGAAGA 4255 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||||||||| ||||| || || | |||||| || || || ||||| Sbjct 4254 CTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347321891933477