Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2177 127 2e-24 seq157 89.7 5e-13 >seq2177 Length=17275 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| |||||||| ||||||||||||||| | ||||| ||| || | Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 38304 GACAGCGTGCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | |||| | ||||| | || || ||||| || ||| | ||||| Sbjct 4033 GATACCAT-CGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCA 4091 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || ||||| || || || | || ||||| ||||||||| Sbjct 4092 GCAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAA 4151 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||| | || || ||| | || || ||| Sbjct 4152 TATTCAAAAAGAATCCACTCTTCATCTCGTTCTCCGT 4188 Score = 116 bits (128), Expect = 4e-21 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || |||||||| || | || || ||| | || Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 38304 GA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || || || ||| | |||| ||| |||| |||||||| || |||||| | || Sbjct 4261 GATACCATCGATCAAG---TAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGAT 4317 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || ||||||| ||| || ||||| || || || | || ||||| |||||| Sbjct 4318 CAGCAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTAC 4377 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| || | || || ||||||||||| ||| Sbjct 4378 AATATTCAAAAAGAGTCAACACTTCATTTGGTGCTTCGT 4416 >seq157 Length=142614 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || || || || |||||||| ||| | || |||||| ||| Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||||| ||| || | || || || |||||||| | || ||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || ||||| |||| || | || || | || || || Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAAT 36670 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || ||| | || || ||||| ||||| || Sbjct 36671 ATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 36717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500102344408960