Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq328 84.2 3e-11 seq2 82.4 9e-11 >seq328 Length=70815 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 176912 TTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACC 176971 ||||||||||| ||||| || || || | || |||||||| | ||| | || ||||| Sbjct 16849 TTCCCACGAAGCGGGAAAACTCCATAATTGTCACGACCAACTATAGAAAATCCGGCAACT 16908 Query 176972 GCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA--CTTGCCAGATTGTG 177029 || | | || |||||||| || || || | ||| | ||||| |||| || || | Sbjct 16909 GCCAAAGCCTTTGCAGAATCGCCTTCAGTAAGGATTAAAGTACAATCTTGACATTTTTTA 16968 Query 177030 CCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAAtt 177076 ||| || || || || |||||||||| ||| | |||||| || ||| Sbjct 16969 CCG--CCGGCATTATTTGCATCATCCAGTTTAGCAATACCCGTGATT 17013 >seq2 Length=211661 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 102166 ||| || || |||| ||| ||||||||||||||| | ||| || |||| | || Sbjct 205169 AGTCCCTTGCATTCGAAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATC 205110 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 ||| |||||||| || || | || ||||| |||||| || || ||||| ||||| Sbjct 205109 ---TTCATTTGCTGAACGTCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGG 205053 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | ||| ||| | || | |||| | ||||| |||| | |||||||| | || | Sbjct 205052 AGCTTTC-GCGTCAATCTTTTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTT 204994 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGA 102314 ||||||| || || ||||| || || ||| Sbjct 204993 CCAACGAACTAATTTCTCGAGATGAAGGA 204965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620654960673680