Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq30 187 3e-42 >seq30 Length=125317 Score = 187 bits (206), Expect = 3e-42 Identities = 327/470 (70%), Gaps = 16/470 (3%) Strand=Plus/Plus Query 154598 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 154657 || ||| ||||| |||||| ||| || |||||||| ||| | ||| | || || || || Sbjct 109262 TGTTATAACAGGATTTGATGGTATTTCTTTACAACCAAACTCTGGAGCTCAAGGAGAATA 109321 Query 154658 TGCAGGACTGTTA-GCA--ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAA 154714 | ||||| ||| | | || |||||||||| || | || |||||||| | || Sbjct 109322 TACAGGA---TTACGTATTATTGGAGCATACCATAAATCAAAGGGTGATGATAAGCGTAA 109378 Query 154715 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGG 154774 ||| ||||| || || | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 109379 TGTTTGTTTAATTCCTGTATCAGCTCATGGTACAAATCCCGCATCTGCTGCGATGGCAGG 109438 Query 154775 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGA 154834 ||| |||||||| ||| || ||||| || ||||| | | || || |||||| | || Sbjct 109439 TATGGAAGTTGTACCTGTTAAATGTGAAAATAATGGTGATCTTGATATGAAAGATTTGGA 109498 Query 154835 GAAGAAAGCAATCA----TGAATACATTTGAACTGTCATGTATTATGATTACATACCCAT 154890 | || || | || | || ||| | | | | | | ||| |||| || |||| Sbjct 109499 AGAAAAGGCTACCAAATTTAAAGACAGATTAGCAGC----TTTCATGGTTACTTATCCAT 109554 Query 154891 CTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATG 154950 | ||| |||||||||||||| || | | |||| | || ||||| | |||| Sbjct 109555 CAACATTTGGTGTATTTGAAAGCGGAGTTGTAAAAGCATGTGAAATAATTCATCAAAATG 109614 Query 154951 GTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCAT 155010 | || || || ||| | |||||||||||| |||||||||| | ||| || | |||| Sbjct 109615 GAGGACAAGTTTATATGGATGGAGCAAATTTAAATGCACAAATTGGATTATGTACACCAG 109674 Query 155011 GTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTG 155059 || | || || || ||||| |||||| | || |||||||||||||||| Sbjct 109675 CTG-GCATAGGAGCTGATGTTTGTCATTTGAATCTACATAAAACATTCTG 109723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579131210636960