Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2177 174 3e-38 seq188 140 7e-28 seq1319 138 3e-27 seq157 136 9e-27 seq364 98.7 2e-15 seq942 86.0 1e-11 >seq2177 Length=17275 Score = 174 bits (192), Expect = 3e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| |||||||||||||| || ||||| | || || | || ||||| Sbjct 3953 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCA 3894 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| ||||| ||||| |||||||| ||||| ||||||||||||||| Sbjct 3893 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 3834 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || | ||||| ||||| ||| ||| ||||||||||| | |||||| Sbjct 3833 ATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTT 3774 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 3773 CCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || |||||||| || || ||||| | |||||| | |||||||| Sbjct 4637 ACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCC 4578 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| ||||| || | ||||| || |||||||| || || ||||| |||||| Sbjct 4577 AATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGA 4518 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || | |||||||| || || ||| || |||||||||| |||||| Sbjct 4517 ATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTA 4458 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| || | |||||| Sbjct 4457 CCAGTAAGTGTTTTTACAAAAATTTGCAT 4429 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || |||||||||||||||||||| || | ||| |||| ||||| || || || Sbjct 4403 TGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCAAGTTGT 4344 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||| Sbjct 4343 TTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTT 4284 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || | || ||||| || ||| || ||||| | |||| || ||||| || Sbjct 4283 GCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTTCCAGTG 4224 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 4223 AGAGTTTTAACAAAAATTTGCAT 4201 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||||||||| ||||||||||||||||| |||| ||| |||| ||||| || Sbjct 4182 AACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTC 4123 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || ||||| ||||| || || ||||| |||||||| || || || || || ||||| Sbjct 4122 AAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTG 4063 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || | || ||||| ||||| || || || | ||| | || || Sbjct 4062 AATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTT 4003 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | |||||| Sbjct 4002 GCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 >seq188 Length=104369 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||||||||||||||||| ||| | | |||||||| | ||| ||||| Sbjct 83259 GTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCA 83200 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | |||||||| || || || || |||||||| ||||||||||||| ||| Sbjct 83199 GCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTG 83140 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||| || |||||| ||||| | |||| || || || || | ||| Sbjct 83139 ACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTT 83080 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 83079 TTAACAAAAATTTGCAT 83063 >seq1319 Length=24104 Score = 138 bits (152), Expect = 3e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || || ||||| ||||||||||| ||||||||||| | |||| || | |||||||| Sbjct 16816 ACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGACAAG-GTACGTCCATCTTC 16758 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || ||||| | ||||| || || || |||||||||||||||||||| Sbjct 16757 CAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTG 16698 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || || || | |||||||| || || || |||||||| |||| || || Sbjct 16697 AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTT 16638 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | |||||| Sbjct 16637 ACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 Score = 111 bits (122), Expect = 3e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| ||||||||||| ||||| || |||| | ||| | |||||||| Sbjct 16589 AACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCTTC 16530 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||| ||||| |||||||| | ||||| || ||||||||||| ||| Sbjct 16529 CAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 16481 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 ||| || || || || || | || |||||| |||||||| || ||||||||||||||||| Sbjct 16982 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 16923 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| |||||| | ||||| || || ||| ||| |||||||| |||| || || || Sbjct 16922 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 16863 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || | ||||| Sbjct 16862 GGTGAGGGTCTTTACAAAAATCTGCAT 16836 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || |||||||||||||| ||||| ||||| | ||||||||||| ||| ||| ||| Sbjct 16400 ATACCTTCTTTGTCTTGGATTTTGCCTTTGACTTGGTCAATGGTGTCAGAAGATTCAACT 16341 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | ||||| || || | ||| |||||||| | |||||| Sbjct 16340 TCAAGAGTGATAGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 16294 >seq157 Length=142614 Score = 136 bits (150), Expect = 9e-27 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || |||||||||||||| ||||| | | ||| | |||||||| Sbjct 36699 ACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGGCCATCTTCC 36640 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| ||||||||||| ||||| || |||||| Sbjct 36639 AATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 36580 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCC--GAACTTTCCACTTCAAGGGTAACCGTCT 195109 || ||| || || | |||||||| || | ||| | ||||||||||||| || | Sbjct 36579 ATCTTTGCTTTAACTTGATCAATGGTATCATTGGACT--CGACTTCAAGGGTAATGGTTT 36522 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | || || ||||| | |||||| Sbjct 36521 TCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || |||||||||||||| ||||| | | ||| | |||||||| Sbjct 37611 ACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCC 37552 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | ||||| || ||||||||||| ||||| || |||||| Sbjct 37551 AATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGA 37492 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || | || ||||| || || || ||||||||||||| || || Sbjct 37491 ATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTA 37432 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 37431 CCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || || ||||||||||| || || | | ||| | |||||||| Sbjct 37383 ACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCC 37324 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| ||||| || || ||||| || |||||| Sbjct 37323 AATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGA 37264 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || | || ||||| || || || |||||||| |||| || || Sbjct 37263 ATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTA 37204 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || || | || || ||||| Sbjct 37203 CCGGTGAGGGTCTTGACGAA 37184 >seq364 Length=140482 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||||| || | || |||||| |||||||||| ||||| | | |||| | Sbjct 20953 AGTCTAAGTACAAGATGCAACGTAGACTCTCTTTGAATATTATAATCTGATAAAGTTTTT 21012 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | |||||||| || || |||| ||||| ||||| ||||||||||||||| Sbjct 21013 CCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCCTTCT 21072 Query 195043 TT 195044 || Sbjct 21073 TT 21074 >seq942 Length=78137 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||| || || | || || |||||||| | ||||||||||| | ||| | || Sbjct 25460 TCTTAATACTAAATGTAGCGTGGACTCATCACATATATTGTAATCACTTAAAGTACGGCC 25401 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| || |||||||| || || || | || |||||| ||||| || || |||||||| Sbjct 25400 ATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGTATACCTTCTTT 25341 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 || ||||||| || | | ||||| || || | || ||||||| || | Sbjct 25340 TTCAGTAATTTTTGTTTTTAATTGATCAATTGTATCACTAAACTCGACTTCAATTGTTAT 25281 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 || ||||| || || ||||| ||| |||| Sbjct 25280 AGTTTTTCCAGTTAATGTTTTAACGTACAC 25251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109321408539323