Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2177 113 3e-20 >seq2177 Length=17275 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||||| ||||| || ||||| |||||| ||||| |||| || Sbjct 4409 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 4350 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || || |||||||| ||| | || | || || ||||| Sbjct 4349 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGG 4290 Query 34893 ATCTT--CTGTT---TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| || || ||| |||| ||||| || ||||| || | || |||| Sbjct 4289 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGAC-----TCAACTTCCAAAGTAATGG 4235 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| |||||||| || ||||| || |||||| Sbjct 4234 TTTTTCCAGTGAGAGTTTTAACAAAAATTTGCATA 4200 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| |||||| ||||| || ||||| |||||| ||||| |||| || || ||| Sbjct 4175 TGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGT 4116 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || || || || || || |||||||||||| | || | |||||||| || ||| || Sbjct 4115 TTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTG 4056 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 ||| || | || | || || ||| || || | ||| |||||||| || ||| Sbjct 4055 GTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTG 3996 Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || ||||| |||||| Sbjct 3995 AGCGTCTTTACGAAGATTTGCATA 3972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324589014517032