Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1915 351 1e-91 seq2 277 2e-69 seq904 123 3e-23 >seq1915 Length=14346 Score = 351 bits (388), Expect = 1e-91 Identities = 676/991 (68%), Gaps = 37/991 (4%) Strand=Plus/Plus Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA-CACA 48177 ||||||| ||||||||| || | |||| ||| |||||| |||| ||| || | Sbjct 10453 TAACTTC--AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAA 10510 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | || ||||| |||| || || || ||||||| | ||| | | |||||| | Sbjct 10511 TAAACT-CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTG 10569 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 | ||||||||||| | | | |||||| || ||| |||| |||| | || | || Sbjct 10570 CATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAA 10629 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | || | || |||| |||||| | ||||||||| || || | | || || ||||| | Sbjct 10630 AATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGT 10689 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | ||||||||||| | |||||| || ||||| |||||||| | |||||| || | ||| | Sbjct 10690 TTCCTCCTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTC 10749 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 ||||||| |||||| ||||| | ||||||| ||| | || | || ||| ||| Sbjct 10750 CATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGT 10809 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | ||| ||||||||||| | ||||| || | || || ||| | |||||||| | Sbjct 10810 TCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGA 10869 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 |||| ||||| ||||||| ||||| |||| ||||||||||| || | ||| || | Sbjct 10870 TTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAG 10929 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 || || | |||||| || || |||||||| ||| |||| | || ||||| | || | Sbjct 10930 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 10989 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 | || ||||||||| ||| || ||||| | || || || | | ||| ||||| | Sbjct 10990 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 11049 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| ||| || | ||| ||| ||| | |||| |||||||| ||| |||| | Sbjct 11050 GCATATGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 11109 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTA 48837 |||||||| |||||||| || ||| | | || |||||| ||| || | ||||| | Sbjct 11110 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 11169 Query 48838 TTCTTTCCTTA-TGTTTATATACTACATCCATTACATTTTT-TGATATAATTGA------ 48889 | ||||| | |||| || || | || || | ||||| || || ||||| Sbjct 11170 GTTTTTCCGAATTGTTCAT-CACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCG 11227 Query 48890 -TTCC--------------------TTGTAAAGATCTTCTACAACATCACTAAATAtttt 48928 |||| || ||||||||||| ||||||| ||| | ||| Sbjct 11228 TTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTT 11287 Query 48929 ttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGG 48988 ||| |||||||||||||||||||| | || || | |||||| | | ||||| || || Sbjct 11288 TTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGG 11347 Query 48989 ATGAATTGTTGTACATGTAC-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAG 49047 ||| | || || ||| ||| | ||||||| || || |||||||||| ||| Sbjct 11348 ATGTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 11406 Query 49048 TTACACCTGTATATATTCCTTGAATAACTTT 49078 | |||||| ||| | |||| ||| || || Sbjct 11407 TAACACCTTGATAAACTCCTGAAATGACCTT 11437 Score = 149 bits (164), Expect = 7e-31 Identities = 228/329 (69%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 47315 AGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATA 47374 ||| ||||||||||||||||| |||| || || | || || || || || ||||| Sbjct 9420 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 9479 Query 47375 TGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 ||||| | | |||||||| || || ||||| | ||| ||||| |||||||| | ||| Sbjct 9480 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 9539 Query 47435 AACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 | ||||| ||||| ||| |||| || | ||| | |||||||| Sbjct 9540 GAGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATC 9599 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 ||| | ||| | || |||||||||| | ||| ||||| | ||| ||||| | ||| Sbjct 9600 CCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGG 9659 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 || || | ||| | | ||| || ||| || || | |||||||| |||||| || Sbjct 9660 TGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAA 9719 Query 47615 TGCACTATAATATATTGTTTCAAATATTT 47643 ||||| || ||| ||||| |||||||||| Sbjct 9720 TGCACCATGATACATTGTCTCAAATATTT 9748 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 47058 TAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47117 || ||||||||||||||||| || | | | | ||||| | |||||||||||||||| | Sbjct 9084 TACAAATGCATACTAGTTAACTTTGCTTTAGTCGGTTCCGCAATATGAATATTAAGACTT 9143 Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177 ||| ||||||||||| ||||| | ||| || |||||||| | |||||| |||| | | Sbjct 9144 TGAGATTGATCAATAAAAGCACCACGATCGGCCGCCATATCAATAATAACTTTTTGCGAT 9203 Query 47178 ATCTCCCATACTGTTTTATA 47197 || |||||| |||||||| Sbjct 9204 ATTTCCCATGTAGTTTTATA 9223 Score = 102 bits (112), Expect = 9e-17 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 47856 TTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT 47915 |||||| ||||||| | | ||||||| || | ||||||||||| || |||| Sbjct 10117 TTATTTTCAACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCC 10176 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 || | | ||||| | || || | ||| | ||||| ||||||||| ||||| | |||| Sbjct 10177 GGGCTCGAATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTT 10236 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 || |||||| ||||| | || ||||| |||||| | ||||| || ||||| Sbjct 10237 TGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCG 10296 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAAC 48064 ||||| ||||||| || | | |||| || Sbjct 10297 ATCTGGGATTCAAGAATTGCTGTCCAGAC 10325 >seq2 Length=211661 Score = 277 bits (306), Expect = 2e-69 Identities = 374/518 (72%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| ||||| ||||||||| || | || | ||||||||||||||| ||||| || | Sbjct 204640 TCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTT 204699 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATC 18775 ||| || | |||||||||||||| ||||| | | |||||| | |||| | Sbjct 204700 GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCAC 204759 Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAAT 18835 | | | | | || || |||||| |||||||||| ||||||| | ||||| | || | Sbjct 204760 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGT 204819 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 |||| || ||||| ||||| |||| ||| ||||| | ||||||||||||||| | || | Sbjct 204820 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 204879 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG--GTATA-GAAGATGTTTAA 18952 | || | |||||||| | | || | || | ||||| || | ||||||| | | Sbjct 204880 CTTCCGCTATAATAGCTTCTAC---AGTTTTTGTTGGAGGTCGTGCATGAAGATGAGTGA 204936 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 | | | |||||||||||||||||| | ||| || |||| | || | ||| || |||| Sbjct 204937 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 204996 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | ||||| || ||||||| ||||||||| |||||||| || || || || || | ||||| Sbjct 204997 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 205056 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 |||||||||| ||||| || || ||||| || || || | ||| || | || || | Sbjct 205057 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGATTCCT 205116 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTT 19170 ||| ||||||| || |||||||| || || ||| Sbjct 205117 TATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 205154 Score = 197 bits (218), Expect = 2e-45 Identities = 231/306 (75%), Gaps = 6/306 (2%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 || || | ||| | ||| ||||| | ||||||||||||||| |||||||| || Sbjct 205288 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 205347 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 ||||||||||| ||||||||||||||||||| || || |||||| ||| ||| | ||| Sbjct 205348 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 205407 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || ||||||||||| || || ||||| |||||||| || || || || || |||| Sbjct 205408 ACTAAATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATA 205467 Query 19405 A--AATGTTT-TTCATC-TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATC 19460 | ||| ||| |||||| | | ||| || | ||||||||| ||||| || || | || Sbjct 205468 AAGAATTTTTCTTCATCGTTAAGTTTAT-ACTCCCAATCATTCATATCCTTGGAAAGGTC 205526 Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATAT-CAC 19519 ||||| ||||| |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 205527 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 205586 Query 19520 GATATT 19525 ||||| Sbjct 205587 AATATT 205592 >seq904 Length=34060 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||||||||| |||| | | || ||| || || |||||||| || || || | | Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||| || |||||| ||||||| |||| ||||||| || | || ||||| |||||| Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 ||| | | ||| ||||| | ||| || || ||||| |||||||| ||||| | ||| Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 48729 GGTCTTTCAACAA 48741 ||||||||||||| Sbjct 10984 GGTCTTTCAACAA 10996 Score = 102 bits (112), Expect = 9e-17 Identities = 244/369 (66%), Gaps = 18/369 (5%) Strand=Plus/Plus Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACTTGTATATGGTTCTAT 47383 ||||||||| ||| || ||| ||| || ||| ||||| ||||| |||||||| | Sbjct 9119 TTGAAATTCCCCACTTAATAC---ACGTCTTTGATAAATATTGCTTGTGTATGGTTCAAA 9175 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 ||||||| ||||||| ||| ||| || ||||| || ||||| | ||||| || || Sbjct 9176 GCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAACAA 9235 Query 47444 GCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATC 47503 |||||||||||||||| |||| | ||| ||||| |||| Sbjct 9236 AGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGATC 9295 Query 47504 TGA---TGGAACAACATT---CCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGA 47557 ||| | | || | | ||| || || || ||||| || |||||||| ||||| || Sbjct 9296 TGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATCGGGGA 9355 Query 47558 ACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCA---A 47614 ||| | |||||| |||||||| | | ||| | |||||| || ||| | | Sbjct 9356 ACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACATGATGATTCAAGAGA 9415 Query 47615 TGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC 47674 ||| || ||||| |||||||| || | | ||| || || | ||||| ||||| Sbjct 9416 TGC---ATGATATAAAGTTTCAAAAATATCTCGGTTAAGCTTACGCGCTTCATCAGATTC 9472 Query 47675 AAAAGGATA 47683 | ||||| Sbjct 9473 CCATGGATA 9481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562029619949160