Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 208 9e-49 >seq2 Length=211661 Score = 208 bits (230), Expect = 9e-49 Identities = 351/501 (70%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 36868 TATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTC 36927 || |||||||||| ||||||||| ||| || ||| |||| || |||||||| || | Sbjct 204637 TACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTAC 204696 Query 36928 CTTCTAGTGATATATTT---TCCATAAAATCAAATGGATTAGATGTATTATATA-TAGTA 36983 ||| || | || || |||||||||||||| ||||| || |||||| | | | Sbjct 204697 CTTGTA---AACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTG 204753 Query 36984 CTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGT 37043 || || | | | || | | ||||| || |||||||| || ||||| ||||| Sbjct 204754 CTCCACCA-AGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAA 204812 Query 37044 TCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATT 37103 | ||| |||||||||| || ||||| | ||| ||| | |||| || ||||||| Sbjct 204813 TTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATT 204872 Query 37104 ATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTT-TAAATA 37162 | || || || ||||| || | || || ||||| || | | || | Sbjct 204873 GTAACCGCTTCCG---CTATAATAGCTTCTACAGTTTTTGTTGGAGGTCGTGCATGAAGA 204929 Query 37163 TT--TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 | | || || | |||||||||||||||||| || |||||||||| | || | ||| Sbjct 204930 TGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCG 204989 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 || ||||| |||||||||||||| | |||||||| || | |||||| |||| || ||| Sbjct 204990 TTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAA 205049 Query 37281 GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT 37340 | |||||||||||| || |||||||| || ||||| |||||||||||| | | || | Sbjct 205050 GCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAA 205109 Query 37341 GAACTATAATCAGAAATCCAT 37361 || | ||| ||||||||| Sbjct 205110 GATTCCTTATCGGAAATCCAT 205130 Score = 122 bits (134), Expect = 1e-22 Identities = 181/255 (71%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 ||||||| |||||| | | |||||||| || || |||||||| || |||||| Sbjct 205294 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 205353 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 || ||||||||||| || ||||| | | ||| || || ||| ||| | | |||| Sbjct 205354 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCCACTAAA 205413 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||||| || || ||||| ||||||||||| || | ||| | ||||| | Sbjct 205414 TTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAAT 205473 Query 37626 CTTTCATCATTTGATAATTTT----TTCCAATCATTAATATCTTTTGATAAATCAACTTC 37681 |||| ||| | | ||| ||| | ||||||||| ||||| || || | |||||||| Sbjct 205474 TTTTCTTCA-TCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTC 205532 Query 37682 ATCAACGGTCCAAAA 37696 ||||| |||||||| Sbjct 205533 CTCAACAGTCCAAAA 205547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592233364774760