Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1319 143 2e-29 seq188 140 3e-28 seq2177 136 3e-27 seq157 134 1e-26 seq1895 107 2e-18 seq942 93.3 3e-14 seq364 87.8 1e-12 seq97 87.8 1e-12 seq586 86.0 5e-12 >seq1319 Length=24104 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| | || | ||| || || || |||||||| ||||||||||| | Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| ||||| ||||| ||||| || || ||||| || ||| Sbjct 16774 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 16715 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| |||||||| || ||| || || | || || || | || ||| Sbjct 16714 ATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACT 16655 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| ||||| | ||| || || || || ||||| Sbjct 16654 TCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 || || || ||||| ||||| | |||||||| || || || |||||||| |||||||| Sbjct 16981 TGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAATC 16922 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 ||| || || ||| | || ||||| | ||| ||||||||||| | ||||| ||| Sbjct 16921 TTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCCG 16862 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || | || |||||||| |||||||| Sbjct 16861 GTGAGGGTCTTTACAAAAATCTGCAT 16836 >seq188 Length=104369 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| | || || || | || ||||||||||| ||||||||||||| Sbjct 83289 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 83230 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | | | |||| || || || ||||| |||||||| ||||| |||||||| || || Sbjct 83229 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 83170 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||||||||||| ||| || | || | || || |||| ||| Sbjct 83169 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 83110 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 || | ||| | ||||| || || | ||||| ||||| || |||||| ||| Sbjct 83109 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA 83058 >seq2177 Length=17275 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||||||||| || || ||||| | | ||| | |||| ||||||||| Sbjct 4631 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 4572 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || |||||||| || ||||| || || || || ||||||||||||||||| Sbjct 4571 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTG 4512 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || || | || ||||| | ||| || ||||| || | ||| || || || Sbjct 4511 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 4452 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||||||||| || ||||| Sbjct 4451 AGTGTTTTTACAAAAATTTGCAT 4429 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| |||||| || || |||||||| || || ||||| | || || | | | || || Sbjct 3953 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCA 3894 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || || || || | ||| || || || || ||||| |||||||| |||||| Sbjct 3893 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 3834 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||| ||| || || | |||||| || | ||| |||||||| |||| || || Sbjct 3833 ATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTT 3774 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| | ||||| || || || |||||| || Sbjct 3773 CCGGTAAGGGTTTTAACGAAGATTTGCATGATT 3741 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | |||||| || ||||||||||| |||||||| |||| | |||| | Sbjct 4188 ACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCC 4129 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||| ||||| || || || | ||| || || || || || || || || || Sbjct 4128 ATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTT 4069 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| |||||| || | || || || | || || || | |||| Sbjct 4068 ATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGAT 4009 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 ||||||||||| | || ||||| || || ||||| | ||||||| Sbjct 4008 GGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCATACCTCCGCGAAG 3961 >seq157 Length=142614 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| | || | ||| || || ||||||||||| ||||| ||||| | Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 36658 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||||||| ||||| || || || || || |||||||| || ||| Sbjct 36657 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 36598 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||| ||| ||| || || | || ||| | || ||| Sbjct 36597 ATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATGGTATCATTGGACTCGACT 36538 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | ||||| || || | || || || ||||| ||||| Sbjct 36537 TCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || |||||||||||||| ||||| ||||| | | ||| | |||| |||||||| Sbjct 37606 ATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTG 37547 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||| || || ||||| || || ||||| || ||||| ||||| ||||||||||| || Sbjct 37546 TTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTT 37487 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| || |||| || ||||| | || |||||||| || | ||||| ||||| Sbjct 37486 TGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGT 37427 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || || ||||| Sbjct 37426 GAGGGTCTTGACGAAAATTTGCAT 37403 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| || | || | ||| || || ||||| ||||| ||||| || || | Sbjct 37401 CCACCTCTTAAGCGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 37342 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||||||| ||||| || || ||||| || |||||||| || || Sbjct 37341 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 37282 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||| ||| ||| || |||| || ||||| | || ||| Sbjct 37281 ATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACT 37222 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 |||||||| | ||||| ||||| | || || || || || Sbjct 37221 TCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAAT 37181 >seq1895 Length=14547 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| ||| | || | |||||| || |||| | ||||| |||| | Sbjct 4249 CCACCTCTTAGACGGAGCACGAGATGAAGAGTTGATTTATCCCTAATATTATAATGTGTC 4190 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| ||| |||| ||| ||||| ||||| |||||||| || |||| || ||| Sbjct 4189 AAAGTATGTTTATCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGA 4130 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||||||||| | | ||| || || || || ||||| | || ||| Sbjct 4129 GTGCCTTCTTTATCTTGAATTATGTTTTTCACTTCTTTAACTGTATCAGAGGCATCAACT 4070 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | | |||||||| ||| |||||| ||||| || || || Sbjct 4069 TCAATGGCAATTGTTTTGCCACTTACAGTTTTAACAAAAATTTGTAT 4023 >seq942 Length=78137 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || ||||| | ||| |||||||| || || || || | |||||||||||| Sbjct 25471 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCATCACATATATTGTAATCACTT 25412 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | ||||||||| ||||| || || | |||||||| || || Sbjct 25411 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 25352 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT--TCTACAGTGTCAGACGTTTCCA 101420 || |||||||| || | | |||||||||| |||| || | || ||| || | Sbjct 25351 ATACCTTCTTTTTC-AGTAATTTTTGTTTT-TAATTGATCAATTGTATCACTAAACTCGA 25294 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTAC 101457 |||||| || | ||||| || ||||| ||||| || Sbjct 25293 CTTCAATTGTTATAGTTTTTCCAGTTAATGTTTTAAC 25257 >seq364 Length=140482 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 ||||| ||| |||| ||||| ||||| | | |||| | |||| |||||||||||||| Sbjct 20974 GTAGACTCTCTTTGAATATTATAATCTGATAAAGTTTTTCCATCCTCCAATTGCTTACCA 21033 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||||| || | ||| || || || || |||||||||||||| Sbjct 21034 GCAAAAATAATACGTTGCTGGTCAGGAGGAATGCCTTCTTT 21074 >seq97 Length=146771 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 ||||| || ||||| ||||| | || | |||| || ||||| | || ||||| Sbjct 24416 TCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGTCTTCCAGCAAAA 24357 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 || ||||| || || || ||||| ||||| || ||||| || || ||| || | Sbjct 24356 ATAAAACGTTGACTATTAGGAGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTAGG 24297 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 | || ||||||| || || || | || |||||||| ||||||| ||||||||| Sbjct 24296 CTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTACA 24237 Query 101459 AATATCTGCATGG 101471 |||| |||||||| Sbjct 24236 AATACCTGCATGG 24224 >seq586 Length=52671 Score = 86.0 bits (94), Expect = 5e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 || ||||| ||||| ||||||||||||||||| || || || ||||||||||||||||| Sbjct 26334 TGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATC 26393 Query 101384 TTTTGTTTTACA 101395 ||||| || ||| Sbjct 26394 TTTTGCTTAACA 26405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396223974753033