Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2177 86.0 5e-12 seq157 82.4 6e-11 >seq2177 Length=17275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || || || || ||| ||| ||| |||| Sbjct 3745 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 3804 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||||| || |||||||| ||| | ||| ||| || Sbjct 3805 GACACTATTGACCAAGTTAAAGCAAAAATTCAA-GACAAAGAAGGAATTCCCCCAGACCA 3863 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | ||||| || || ||||||||| | ||||| || | | |||||||| Sbjct 3864 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAA 3923 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||| || ||||| || | ||| | || | || ||||| || Sbjct 3924 CATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGGTAT 3974 >seq157 Length=142614 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || |||||||| |||||| ||| || | || Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||| | || || || || || | || |||||| Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAA-GATAAGGAAGGTATTCCTCCAGATCA 37521 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | | ||||| || || ||||||||||||||| | ||| | | |||||||| Sbjct 37522 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAA 37581 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||||||||||||||||| || Sbjct 37582 TATTCAAAAAGAATCTACTCTCCA 37605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425346374505951