Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq30 159 4e-34 >seq30 Length=125317 Score = 159 bits (176), Expect = 4e-34 Identities = 321/470 (68%), Gaps = 16/470 (3%) Strand=Plus/Minus Query 138228 CAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCT 138287 |||||||| ||||||| ||| | |||||| ||||| || || | || |||| | | Sbjct 109723 CAGAATGTTTTATGTAGATTCAAATGACAAACATCAGCTCCTATGCCAGCTGGTGTACAT 109664 Query 138288 AGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGA 138347 | || | |||||||||| |||||| ||||| | ||| || || || ||||| | |||| Sbjct 109663 AATCCAATTTGTGCATTTAAATTTGCTCCATCCATATAAACTTGTCCTCCATTTTGATGA 109604 Query 138348 ACGATCTTACATATCTGTCTGATGTTTG-TTTCAAATACACCATGAGTCGATGGATATGT 138406 | || | |||| || | | | | |||||||||||||| || |||||||| || Sbjct 109603 ATTATTTCACATG-CTTTTACAACTCCGCTTTCAAATACACCAAATGTTGATGGATAAGT 109545 Query 138407 AATCATAATACATGAGAGTTCAAATGTATTCA----TGATTGCTTTCTTCTCTAGATCTT 138462 || ||| | | | | | | ||| || | || | || || | || | ||||| Sbjct 109544 AACCATGAAAGCT----GCTAATCTGTCTTTAAATTTGGTAGCCTTTTCTTCCAAATCTT 109489 Query 138463 TGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGA 138522 | || || | | |||| || ||||| || ||| |||||||| ||| |||||||| Sbjct 109488 TCATATCAAGATCACCATTATTTTCACATTTAACAGGTACAACTTCCATACCTGCCATCG 109429 Query 138523 CTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTAT 138582 | ||| || ||||| || ||||| ||||| | || || | ||| ||||| | |||| Sbjct 109428 CAGCAGATGCGGGATTTGTACCATGAGCTGATACAGGAATTAAACAAACATTACGCTTAT 109369 Query 138583 CATCTCCTGATCCTTGATGATATGCTTGGAT--TGC-TAACAGTCCTGCATACTCACCCT 138639 |||| || | || ||| |||||| || | | ||| ||||| ||| || || | Sbjct 109368 CATCACCCTTTGATTTATGGTATGCTCCAATAATACGTAA---TCCTGTATATTCTCCTT 109312 Query 138640 GTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCA 138689 | | ||| | ||| |||||||| || ||| |||||| ||||| ||| || Sbjct 109311 GAGCTCCAGAGTTTGGTTGTAAAGAAATACCATCAAATCCTGTTATAACA 109262 Score = 113 bits (124), Expect = 5e-20 Identities = 210/306 (69%), Gaps = 7/306 (2%) Strand=Plus/Minus Query 139266 TCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTG 139325 |||| ||||||||| ||||| | ||| |||||| || | ||||||||||| || Sbjct 108527 TCTGGTCCATGATATATAGCATACATAGCAGCCATATTAGCCAAGAGTGCTTGTGCAGTA 108468 Query 139326 CAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAAT 139385 || || ||||| || ||||| |||| ||||||||| || ||||| ||||||| | || Sbjct 108467 CATATATTACTAGTAGCTTTCTCTCGTCTAATATGTTGTTCTCTGGTTTGTAACGACAAA 108408 Query 139386 CTGTATGCAGGATTGCCTTCGCTG--TCCACTGACTGACCTACAATTCTGCCAGGTATCT 139443 | || || ||| || | || ||| || || || | || || || || Sbjct 108407 CGATAAGCTTTATTTCC--AGATGCATCCCGCGAGACCCCAACTAATCGACCTGGCATTC 108350 Query 139444 TTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAG 139503 ||| |||| | |||| | ||||| ||||| ||||| || || || || || | || Sbjct 108349 TTCGCTTAAGTTGGTCTTTGCAAGCAAAAAATGCGGCATGCGGGCCACCATAACCTAAAG 108290 Query 139504 GAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTCACCTACAGGTT 139563 ||| |||||| | || || | ||||||||||||||| ||||| | || ||||| Sbjct 108289 GAACACCAAAGCGCTGACTATTGCCTACAGCAATATCAGCACCCCATT---CTCCAGGTG 108233 Query 139564 GCATTA 139569 | |||| Sbjct 108232 GTATTA 108227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578916840837880