Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq12 205 1e-47 >seq12 Length=225432 Score = 205 bits (226), Expect = 1e-47 Identities = 224/298 (75%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 47850 ATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTC 47909 ||||||||||||||| ||||| ||||| ||||||| || || || | ||||| || Sbjct 173312 ATAATCTCTGGCATGACCCCAATCACGTTTGGCATCAACGTTACCAAGCCACAAACATTC 173253 Query 47910 TTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTC 47969 ||| ||||| || ||| | || || | || ||||||||||||||| || || Sbjct 173252 TTGTTTACCCAAGGAAATTTCAGCTACAGCACGTGAAATCTTACGAGTTACGAATGTACG 173193 Query 47970 ACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGA 48029 |||||| | ||||||||||||||||| | || || |||| ||| |||| ||| | Sbjct 173192 ACCACGACGAGGAGATTCATGATTAAATAAAACGCCGTTACAAGCAAACATATTGTAGGC 173133 Query 48030 TTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089 ||||||||| || |||| |||||||| | || | ||| ||||| |||||||| ||||| Sbjct 173132 TTCACGATAATTAGTTACAATCCAGTATGCGTACAATTTGGCAACTCCATAAGGTGAACG 173073 Query 48090 TGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCA 48147 ||||||||||||||||| |||| || || || || || ||||||||||||||| Sbjct 173072 AGGATAGAAAGGTGTGGTTTCTGATTGAGGTGTTTCAACGACTTTACCATAAAGTTCA 173015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665400656795080