Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2177 143 5e-29 seq188 141 2e-28 seq157 141 2e-28 seq1319 136 7e-27 seq2849 113 8e-20 seq942 107 3e-18 seq34 100 5e-16 seq432 95.1 2e-14 seq97 93.3 8e-14 seq818 84.2 4e-11 >seq2177 Length=17275 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| |||| ||| | ||| | |||||| |||||| Sbjct 4437 AATTTGCATACCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATT 4378 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | |||| ||| || | |||||| ||||| ||||| | | || || Sbjct 4377 GTAGTCAGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTG 4318 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||| ||||| || || | ||||| | || |||||||| Sbjct 4317 ATCTGGGGGAATACCTTCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGA 4258 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||| | ||| || ||||| || || || ||||| ||||| |||||||| Sbjct 4257 AGACTCAACTTCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | ||||||||| ||||| | || | |||||| ||| ||| Sbjct 3980 ATTTGCATACCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTA 3921 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | || || | |||||| || || ||||| | | || || Sbjct 3920 TAATCTGAGAGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGG 3861 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| ||||| ||||| | ||| | | |||||| |||||| Sbjct 3860 TCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAA 3801 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || || || || || || || || ||||| || || |||||||| Sbjct 3800 GATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || || ||||| | || | ||||| |||||| Sbjct 4209 AATTTGCATACCACCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATT 4150 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | |||| ||| || | |||||| || || ||||| | | || || Sbjct 4149 GTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTG 4090 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || |||||||| ||||||||||||| | || ||||| || Sbjct 4089 GTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGA 4030 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || ||||| || || ||||| ||||| || |||||||| Sbjct 4029 GGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| || || | || | | ||| || ||||| || || || ||||| || | Sbjct 4610 ATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGT 4551 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| || || ||||||||||| ||||||||||| | | ||| ||| Sbjct 4550 TGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTA 4491 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || || || || || || || || || ||||| || || ||||||||||| |||||| Sbjct 4490 TCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGC 4431 Query 193359 AT 193360 || Sbjct 4430 AT 4429 >seq188 Length=104369 Score = 141 bits (156), Expect = 2e-28 Identities = 172/234 (74%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || |||||||||| || ||||| | ||||| |||||| || ||||| Sbjct 83289 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 83230 Query 193194 A----ACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 | |||| | ||| ||||| ||||| || ||||| ||||| | |||||||| || Sbjct 83229 AGTGAACGTCC----ATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGG 83174 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 || ||||||||||||||||| ||||| ||| | || || |||||| | || Sbjct 83173 GGGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTC 83114 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| ||| || |||||||| || || ||||| ||||| |||||||| || Sbjct 83113 AACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTT 83060 >seq157 Length=142614 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| || |||||||| ||||| | || | || || |||||| Sbjct 37411 AATTTGCATACCACCTCTTAAGCGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATT 37352 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| ||||| || | ||| || |||||||| ||||| || || || | ||||| Sbjct 37351 ATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTG 37292 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| |||||||| || || | ||| | | || ||||| || Sbjct 37291 ATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGA 37232 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTT 193356 ||||| ||||| ||||| || |||||||| || || || || || || |||| Sbjct 37231 GGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTT 37179 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| || || ||||| ||||| | || | ||||| |||||| Sbjct 36727 AATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATT 36668 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || || || | ||| || |||||||| || || || ||||| | ||||| Sbjct 36667 ATAATCTGACAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTG 36608 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| |||||||| |||||||| || || | ||| | | ||| ||||| Sbjct 36607 ATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATGGTATCATT 36548 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| || || || || || || ||||||||||| Sbjct 36547 GGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | |||||||| ||||| | |||| ||||| ||||||||| || || Sbjct 37630 ACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGA 37571 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | | ||| || |||||||| || || || || || | || ||||| ||||| Sbjct 37570 TAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 37511 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| |||||||| || || | ||| | | || ||||| || |||||||| Sbjct 37510 AATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 37451 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || |||||||| || || || || || || |||||||| Sbjct 37450 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 >seq1319 Length=24104 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || || || || ||||| | || | |||||| ||||| || || Sbjct 16837 ATACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCT 16778 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || |||||||| |||||||| || || | || ||||| || Sbjct 16777 GACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGG 16718 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | ||| | | ||| ||||| || ||||| Sbjct 16717 GGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCT 16658 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| ||||||||||| || || || || || || |||||||| Sbjct 16657 ACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq2849 Length=14001 Score = 113 bits (124), Expect = 8e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||||||||| |||||||| ||||||| | ||||||||| || ||||| | Sbjct 4109 CCAGCAAAAATTAATCTTTGTTGATCTAGAGGTATCCTTTCTTTATCCTGAATTTTTTCT 4050 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| || |||| ||||| | | | | |||||| |||||||||||||| |||| Sbjct 4049 TTTAGGTTATAAATTGTATCACTAAAATTTAATTCTAGTGTTATAGTTTTACCAGTTAAT 3990 Query 193341 GTTTTTACAAATATTTG 193357 ||||| || |||||||| Sbjct 3989 GTTTTAACGAATATTTG 3973 >seq942 Length=78137 Score = 107 bits (118), Expect = 3e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| || |||| | ||| | ||| | || | ||| | | | ||||| || || | Sbjct 25471 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCATCACATATATTGTAATCACTT 25412 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| || | ||| || || |||||||||||||| |||||||| || ||| Sbjct 25411 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 25352 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAA-AATAGTATCGGAAGACTCAAC 193312 || |||||||| || ||||| ||||||| ||| | ||| ||||| | |||| || Sbjct 25351 ATACCTTCTTTTTCAGTAATTTTTGTTTTTA-ATTGATCAATTGTATCACTAAACTCGAC 25293 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 ||| | ||||||||||| || |||| ||||| || Sbjct 25292 TTCAATTGTTATAGTTTTTCCAGTTAATGTTTTAAC 25257 >seq34 Length=176868 Score = 100 bits (110), Expect = 5e-16 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 193145 TCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGA 193204 || ||||| ||||| ||||| |||||| |||| ||| || || || || | Sbjct 50745 TCTAAGTATAAGATGAAATGTGCACTCTTTGTGGATATGATAATCTGACAAGGTACGTCC 50804 Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 || ||||||||| | || |||||||| | | |||||||||||||| ||||||||||| Sbjct 50805 GTCTTCTAATTGTATGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTCTTT 50864 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATC---GGAAGACTCAACTTCTAGAGT 193321 || | || || |||| | || ||| ||||| |||| | || || | || Sbjct 50865 GTCATTAATCTTACTTTTAAGTTTGTCAATTGTATCACTCGAAGTC---ACCTCCAATGT 50921 Query 193322 TATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||| ||||| || ||||| ||||| |||||||| ||| Sbjct 50922 TATTGTTTTTCCAGTTAGTGTTTTCACAAATATCTGC 50958 >seq432 Length=103261 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | |||| | || |||| ||||| | ||||| || || || || || Sbjct 93811 ACCACCACGTAATCTCAATATAAGATTTAATGTGGATTCTTTTTTTATCTTGTAATCCGA 93752 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 |||||| | | ||| || | | |||| ||| |||||||| | |||||| | |||| Sbjct 93751 TAACGTACAATCATCTTCAAGTAACATTCCAGCATAAATTAATTTTTGTTGACCTAGAGG 93692 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||| ||||||||||| || ||||| ||||| | |||| ||||| | | ||||| Sbjct 93691 TATCCCTTCTTTATCCTGAATTTTTTCTTTTACGTAATAAATTGTATCACTAAAATCAAC 93632 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || ||| ||||||| |||| |||| || |||||||| Sbjct 93631 GCATATTGTAATACTTTTACCAGTTAATGTTTGAACGAATATTTG 93587 >seq97 Length=146771 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||||| |||| |||||||| || | || || |||||| |||||||| || Sbjct 24381 ATCTTCTAATTGTCTTCCAGCAAAAATAAAACGTTGACTATTAGGAGGAATTCCTTCCTT 24322 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || ||| ||| | || ||||| || ||||| || || | |||| Sbjct 24321 GTCTTGGATCTTGCATTTAACTAGGCTGATGGTATCAGACGACTCTACCTCCAAGGTTAC 24262 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| ||||||||||||| ||||| Sbjct 24261 CGTTTTTCCGGTTAGTGTTTTTACAAATACCTGCAT 24226 >seq818 Length=79418 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276 ||| |||| |||||||||| | ||||||| || ||||| ||||| || | |||||| Sbjct 29924 TTTACCGGTAAAAATTAATTTTTGTTGATTTGGCGGTATGCCTTCAATAATATATATTTT 29865 Query 193277 GGTTTTTATATTTAAAATAGTATCGG-AAGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 ||||||| | ||| || || |||| ||||| |||| |||||||||||||| | Sbjct 29864 CGTTTTTAACTGATCAATTGTTTCATTAAGA-TCAACATCTACTGTTATAGTTTTACCCG 29806 Query 193336 TTAGCGTTTTTACAAATA 193353 ||| ||||| || |||| Sbjct 29805 TTAATGTTTTAACGAATA 29788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899527672432080