Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq942 158 2e-33 seq2849 131 2e-25 seq2177 114 2e-20 seq188 114 2e-20 seq1895 113 7e-20 seq432 111 2e-19 seq1319 105 1e-17 seq157 105 1e-17 seq38 96.9 5e-15 >seq2 Length=211661 Score = 161 bits (178), Expect = 1e-34 Identities = 316/462 (68%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| || ||| || ||| || ||||||||||| || |||| || || Sbjct 204650 AGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAAT 204709 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 ||||| |||||||||||| ||||| | ||||| ||||| || | | | Sbjct 204710 TAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCAC 204769 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAAT-CGCAATTCATACCTA 18038 |||||||||||| ||||||||||| | ||||| | ||| |||| ||| |||||||| | Sbjct 204770 TAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-TTCATACCAA 204828 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 || | | |||| || || | | |||||||| ||||| ||| | || || Sbjct 204829 TTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTA 204888 Query 18099 TTATGTTTATTACCCTAGATTTTG--GCAATTTATTAATTATGTGATTATAATATAATAA 18156 | || | ||| || ||||| | | | | || | | || | |||| | Sbjct 204889 TAATAGCTTCTAC---AGTTTTTGTTGGAGGTCGTGCATGAAG--ATGAGTGAATAAGAG 204943 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| ||||||||| || || |||||||||| || |||| |||||| ||| ||||| Sbjct 204944 ACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAA 205003 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| || |||||||| |||| |||||| || || |||||| | ||||||||| Sbjct 205004 TCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAA 205063 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318 ||| || ||||| || ||||||| | | ||||||||| Sbjct 205064 TATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAA 205105 Score = 131 bits (144), Expect = 2e-25 Identities = 201/286 (70%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || || ||||||| || || || | || |||||||| ||||| || |||| || Sbjct 205288 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 205347 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 |||||||| | |||||| |||| || || ||| ||| | || || ||| | ||| Sbjct 205348 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 205407 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 || ||||| ||||| || ||||| || | | ||| || || |||||||| | ||| Sbjct 205408 ACTAAATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAACGTGAGAAATA 205467 Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTTC---CATTCATCTATATCTTTTGATAGATCA 18658 || |||||| | ||| || || || | | || |||| ||||| || || || ||| Sbjct 205468 AAGAATTTTTCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCA 205527 Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 ||||| || |||||||| || | |||||||| ||||||||||| Sbjct 205528 ACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTT 205573 >seq942 Length=78137 Score = 158 bits (174), Expect = 2e-33 Identities = 168/217 (77%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 155836 ttaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT-TTA 155894 |||||||||| |||||||||||||| ||| | |||||||| | ||||| ||| | Sbjct 25258 TTAAAACATTAACTGGAAAAACTATAACAATTGAAGTCGAGTTTAGTGATACAATTGATC 25317 Query 155895 AACGTGAAAAATAAAA--TACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGA 155952 || | ||||| |||| ||| || |||||||| ||||| ||||| ||||||||||| | Sbjct 25318 AA--TTAAAAACAAAAATTAC-TGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAA 25374 Query 155953 TTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAG 156012 ||| ||| |||||||| || |||||| | | |||||| ||||| ||||||| | | Sbjct 25375 TTTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGATG 25434 Query 156013 AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || | ||||| |||||||| ||||||||||| || || Sbjct 25435 AGTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG 25471 >seq2849 Length=14001 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 155826 caaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGAT 155885 |||||||| |||||||||| ||||| |||||||| ||| ||||| | | | |||| Sbjct 3973 CAAATATTCGTTAAAACATTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 4032 Query 155886 AATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAA 155945 | |||| ||| | ||| | ||||| || ||||||||| | ||||||| ||| |||||| Sbjct 4033 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAAGGATACCTCTAGATCAACAA 4092 Query 155946 AGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATA 156005 ||||| |||| ||| |||| | || |||||| | | || ||||| ||||| |||| Sbjct 4093 AGATTAATTTTTGCTGGTATGTCACTTGAAGATGGCCGTACGTTATCGGATTACGGTATA 4152 Query 156006 TCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAA 156042 ||||| | || | ||| |||| || ||| ||| Sbjct 4153 AAAAAAGAATCCACAATACATATAGTATTGAGACTAA 4189 >seq2177 Length=17275 Score = 114 bits (126), Expect = 2e-20 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| | ||||| || || ||||| | || |||||| ||| Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| | || |||| ||||| ||||||||||| || || |||||||| || Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 4548 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| || |||||||| | |||||| | ||| | || ||||||| Sbjct 4549 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATA-- 4606 Query 156003 ATATCCAAAGAG 156014 | ||||||| || Sbjct 4607 ACATCCAAAAAG 4618 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||||||||| ||||| || ||||| || ||| Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | || ||| || || ||||| |||||||| || || ||||| || Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| |||||||| || || || ||| |||| | || || || ||| Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || |||||||| ||| Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGTG 4410 Score = 95.1 bits (104), Expect = 2e-14 Identities = 173/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 155781 aataaagtatttattgtttataataaaaatttatgtaataaaatgcaaatatttattaaa 155840 || ||| | ||| |||| | |||| || | ||| ||| | ||||||| || ||||| Sbjct 3706 AAAAAATTTTTTGTTGTATTTAATTAATAATTAAC-AATCA--TGCAAATCTTCGTTAAA 3762 Query 155841 aCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTG 155900 || | || ||||| || || || | ||||| ||| ||| || | |||| | || Sbjct 3763 ACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGACACTATTGACCAAGTT 3822 Query 155901 AAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCC 155960 ||| ||||| ||||| |||||||| || || ||||| || ||| | | |||| || Sbjct 3823 AAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAACGTCTTATTTTCGCT 3882 Query 155961 GGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACG 156020 || || || || ||||| | | || | ||||||||||| || |||||| | || Sbjct 3883 GGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAACATTCAAAAAGAGTCAACT 3942 Query 156021 CTTCATTTAGT 156031 |||||| |||| Sbjct 3943 CTTCATCTAGT 3953 >seq188 Length=104369 Score = 114 bits (126), Expect = 2e-20 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 155807 aaatttatgtaataaaatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATT 155866 |||||| | ||| | |||||||| ||| |||||||| | ||||| ||||| ||||| || Sbjct 83049 AAATTTTTTTAA--ACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTT 83106 Query 155867 AGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 |||||| ||| | |||| || || || ||| | ||||| |||||||||||||| Sbjct 83107 AGAAGTTGAAAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGG 83166 Query 155927 CATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || || || |||||| | || || | ||| ||||| ||| | |||||| Sbjct 83167 AATCCCCCCGGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGAT 83218 >seq1895 Length=14547 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 || ||||| ||| ||||||| | | ||| ||||| ||| | | ||||| || | ||| Sbjct 4023 ATACAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCT 4082 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | | |||||||| | ||| |||||||||||||||| |||||| | || Sbjct 4083 GATACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAG 4142 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| ||||| || || ||||||| ||||| || |||||||| Sbjct 4143 CAACGTTTGATCTTTGCTGGTAAACAACTGGAAGATAAACATACTTTGACACATTATAAT 4202 Query 156003 AT 156004 || Sbjct 4203 AT 4204 >seq432 Length=103261 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 155826 caaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGAT 155885 |||||||| || ||||||| ||||| |||| ||||||| || || || | |||| Sbjct 93587 CAAATATTCGTTCAAACATTAACTGGTAAAAGTATTACAATATGCGTTGATTTTAGTGAT 93646 Query 155886 AATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAA 155945 | |||| |||| ||| | ||||| || ||||||||||| ||||||| || |||||| Sbjct 93647 ACAATTTATTACGTAAAAGAAAAAATTCAGGATAAAGAAGGGATACCTCTAGGTCAACAA 93706 Query 155946 AGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATA 156005 | ||| |||||||| || | | || |||||| | || ||||| ||||| || ||| Sbjct 93707 AAATTAATTTATGCTGGAATGTTACTTGAAGATGATTGTACGTTATCGGATTACAAGATA 93766 Query 156006 TCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 ||||| | || | || | | || |||||| | || |||| Sbjct 93767 AAAAAAGAATCCACATTAAATCTTATATTGAGATTACGTGGTGGTG 93812 >seq1319 Length=24104 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || | || || ||||||||||| | ||||| || || Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| | || ||| || || ||||| ||||||||||| || || || || Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 16727 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||||||||| || | |||||| | || || |||||||| ||| Sbjct 16728 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 16787 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || ||| | ||| | | |||||||| ||| Sbjct 16788 ATCCAAAAAGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGT 16835 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||||||||| | ||||| ||| |||| Sbjct 16836 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 16895 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| | | || || | || || ||||| |||||||| || |||||||| ||| Sbjct 16896 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 16955 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAG 155969 ||||||||||||| ||| || || ||| Sbjct 16956 CAAAGATTGATTTTTGCTGGCAAACAG 16982 >seq157 Length=142614 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | || || | ||||| ||||| ||||| | |||||||| | Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| | || ||| || || |||||||| ||||| || |||||||| ||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | || ||||| || | |||||| | | ||||| |||||||||||| Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAAT 36670 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || ||| | || | | |||||||| ||| Sbjct 36671 ATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGT 36718 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | || || ||||| ||||| | ||||| || ||| Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | || ||| || || |||||||| ||||| || |||||||| || Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 37522 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| || | |||||| | |||||||| ||||||||| Sbjct 37523 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 37582 Query 156003 AT 156004 || Sbjct 37583 AT 37584 >seq38 Length=163822 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 155921 AGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATAC 155980 |||||| ||||||||||| |||||| | ||| || |||||||| || || |||||| Sbjct 74513 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 74572 Query 155981 CAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 | |||||| ||||||||||||| | || | || | |||||||| |||||||| Sbjct 74573 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 74632 Query 156041 AAGAGGCGGTG 156051 |||||| |||| Sbjct 74633 AAGAGGTGGTG 74643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731768906680400