Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1915 152 2e-31 seq206 96.9 1e-14 seq14 95.1 4e-14 seq82 91.5 4e-13 seq944 86.0 2e-11 >seq1915 Length=14346 Score = 152 bits (168), Expect = 2e-31 Identities = 304/447 (68%), Gaps = 10/447 (2%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || ||||| ||||| | ||| || ||||| | || | || |||||||||||| Sbjct 10689 TTTCCTCCTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATT 10748 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||| ||||| ||||| ||||| || || | | |||| |||||||| Sbjct 10749 CCATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATG 10808 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | | ||||||||||||| |||||||| |||||| || | ||||| | Sbjct 10809 TTCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAG 10868 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA---CGAACTTAATTGAGGT 156296 || || || || |||||||||| ||| | || ||| | || |||| | ||||||| Sbjct 10869 ATTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAA---AGTTGAGGT 10925 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 | ||||| ||||| || || | || || | ||| ||| |||| |||| | ||||| Sbjct 10926 CTAGGTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATC 10985 Query 156357 TAATCGTATGTCTCCTTA--ATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCC 156414 || ||| || || || | || || | || | |||||||| | | | || | Sbjct 10986 AGATTGTAAGTTTCAATAGCAGCT--TCGATATCATCTCCGTGAATCCCAACCGCTACGC 11043 Query 156415 TCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGC 156474 ||| |||||| || |||||||| ||| |||| | ||||| | ||| || | | Sbjct 11044 GCATAAGCATATGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATC 11103 Query 156475 GTTCCAGAGTTTTAAACCCGAAATAAT 156501 ||| ||||||||||| || ||||||| Sbjct 11104 TTTCAAGAGTTTTAAATCCAAAATAAT 11130 >seq206 Length=70616 Score = 96.9 bits (106), Expect = 1e-14 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 380906 AAGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGCTAAAGGCACAGAATG 380965 ||||| || ||||||||||||| ||| ||||| | || | ||| | | | | Sbjct 45030 AAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGGTA 45089 Query 380966 TAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAATA 381025 | | || ||| | ||||||||| |||||| | ||| ||| ||| ||| | ||| Sbjct 45090 TTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACATA 45149 Query 381026 ACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGATT 381085 |||||| ||| | |||||| |||| ||||| || |||||||||||| || || | Sbjct 45150 GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAGT 45209 Query 381086 ATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCA 381128 | | |||| |||| ||||| |||||||| ||||| || || Sbjct 45210 ACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCA 45252 Score = 91.5 bits (100), Expect = 4e-13 Identities = 222/330 (67%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 381223 ATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAATGTTTCGGCTGGTAATAAGTTA 381282 ||||| |||||||| || ||||| || ||||| ||| |||| || | || | ||| Sbjct 45415 ATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATTA 45474 Query 381283 AGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCT 381342 ||| | | ||||| | |||||||||| || ||||| ||||| || ||||| Sbjct 45475 TCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGCA 45534 Query 381343 TCGTATTCTATGCTTACTCGTTTAATTGCTCATCACACTGGACTAATTGCGGGTGATTTT 381402 ||| |||| | |||| | | ||||||||| || || | | | ||||| ||| Sbjct 45535 AGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATTT 45594 Query 381403 GTTTATTATCTCGGTAATACTCATATATACGACGACCATATTGAGAATTTAAAAGTTCAA 381462 || || | ||| ||||||||||||| | || |||||| | ||||||| |||| Sbjct 45595 ATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCAA 45654 Query 381463 A-AAACCAGGACACCATATGCGTTTCCAACGTTAGA----TATACTAAATACTTACGATA 381517 | | | || |||| | || ||||| |||| || || || || | ||| ||| Sbjct 45655 ATCGAACGTGA-ACCAAAAGCATTTCC-TCGTTTGAAATTTAGACGCAA-AATTA--ATA 45709 Query 381518 ATATTGAAGATTACACGGTTGATGATTTTA 381547 ||||||| |||| | ||||||||||| Sbjct 45710 ATATTGATGATTTTAAATATGATGATTTTA 45739 >seq14 Length=144294 Score = 95.1 bits (104), Expect = 4e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| || ||| || ||||| | || || || || || ||||||||| | Sbjct 49615 AATTTCTTTAAGACGTGGTACACCGAGAGTAACATTT---TTACTCGATACACCAGCATA 49671 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||||| ||||| | ||||||| || ||||||||| |||||| |||| | Sbjct 49672 ATGGAAAGTATTTAGAGTCATCTGAGTAGCCGGTTCACCAATAGATTGTGCGGCAACAGT 49731 Query 301935 ACCAACCATTTCTCCTGG 301952 |||||||||||| ||||| Sbjct 49732 ACCAACCATTTCACCTGG 49749 >seq82 Length=116550 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||||| |||||||| || ||||| || || ||||| ||| | | ||| | Sbjct 78031 ATTGTCATACGACTAGGAATAGCGTGTGGATTTATAATAATGTCAGGTGTAACACCACTA 78090 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGTGA 251964 ||||| || |||||||| | || | | | || ||||||| ||||| || || || ||| Sbjct 78091 GCAGTAAATGGCATATCTTCTTGATGATAAGTGATTCCAATTGTTCCTTTCTGACCATGA 78150 Query 251965 CGAGAACTGAACTTATCACCAAT 251987 ||| ||| ||||| ||||| Sbjct 78151 CGACTCGCGAATTTATCTCCAAT 78173 >seq944 Length=56527 Score = 86.0 bits (94), Expect = 2e-11 Identities = 220/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||| ||| |||| || |||||||| || | || || | ||| || | | || | | Sbjct 47690 CCTTGATTTTCCAATTGCGTCAATTTCATCCACAAATATTATACAAGGTGCGTGTTTTTT 47749 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 ||| ||||||| || || | ||| | || | |||| ||||||| ||||||| ||||| Sbjct 47750 CGCGTTTGCAAACAAATCACGTACTCTAGACGGACCAACACCAACAAACATTTCAACAAA 47809 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | ||||| | ||||| ||| ||||| || || || | || || Sbjct 47810 TTCAGATCCTGATACACTTAAGAATGGGACACCAGCTTCACCCGCAGTAGCTTTTGCAAG 47869 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || ||||| || || || || || ||| | | || ||||||| ||| || || Sbjct 47870 CAAAGTTTTACCGGTACCTGGAGGACCACTTAAAATGGCACCTTTTGGTATTTTAGCACC 47929 Query 289260 AGCAGACTTATATTTCTCAG--GGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATA 289316 || ||| | | ||| || || ||||| |||| |||| |||| | ||| | Sbjct 47930 --CAATCTT-TCATAAGCAGTCGGATCTTTTAAGAATTTAACAAATTCCATTATTTCCTC 47986 Query 289317 TTTTGCCTCATCACAT-CCTGCTACATC 289343 ||| || ||||| ||| || |||||||| Sbjct 47987 TTTGGCTTCATC-CATACCAGCTACATC 48013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471605092995653