Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq188 152 5e-32 seq2177 136 4e-27 seq1319 136 4e-27 seq1915 123 2e-23 seq157 118 1e-21 seq1895 96.9 3e-15 seq81 86.0 6e-12 >seq188 Length=104369 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| || || |||||||| ||||| | ||||| ||| | | Sbjct 83063 ATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGC 83122 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||| || ||||| ||||||||||| || || |||||| Sbjct 83123 GATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAA 83182 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||| || ||||| || |||||| | || || | || || | || ||||| || Sbjct 83183 CAACGTTTAATATTTGCTGGTAAACAGTTAGAAGA-TGGACGTTCACTTTCCGATTACAA 83241 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 |||||||| ||||| ||| |||||||||| | || || ||||| ||||| Sbjct 83242 TATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCGG 83292 >seq2177 Length=17275 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| || || || ||||| ||||| | ||||| || | || Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || |||||| ||||||||||||||||||||| || || || ||||| Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| ||||| || |||||| ||| | | || || || || Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| || || ||||| || |||||| Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGTG 4410 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| || ||||| || || || || || ||||| ||| | || Sbjct 3745 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 3804 Query 24764 GACACAGTAGAA-ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | | |||| ||||| || ||||||||||||||||| || || || || Sbjct 3805 GACACTATTGACCAAGTTAAAGCAAAA-ATTCAAGACAAAGAAGGAATTCCCCCAGACCA 3863 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || || || || ||||| || || || | | | | ||||||||||| Sbjct 3864 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAA 3923 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| || || || || || | || | ||| | |||||||| Sbjct 3924 CATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 3971 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || ||||| || ||||| || || || ||| | | Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || ||| ||||| ||| || ||||| ||||| || || ||||| ||||| Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAA-ATTCAAGATAAAGAGGGTATCCCTCCAGATCA 4547 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||| || || || || || |||| ||| | | | || |||||||| Sbjct 4548 GCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAA 4607 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| ||||| ||||| || || ||| Sbjct 4608 CATCCAAAAAGAATCAACTCTTCAC 4632 >seq1319 Length=24104 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||||||||||||||| || |||||||| || | Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || || ||| ||||| |||||||||||||| || || || ||||| Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 16727 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||||||| ||||| |||| ||| | | | |||||||||| || Sbjct 16728 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 16787 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || ||||| || || || || || Sbjct 16788 ATCCAAAAAGAGTCAACTCTCCA 16810 Score = 116 bits (128), Expect = 3e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| || ||||| ||| | | Sbjct 16836 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 16895 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | ||| || || |||||| |||||||||||||| || ||||| |||||| Sbjct 16896 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 16955 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||| | ||||| ||||| || |||||| Sbjct 16956 CAAAGATTGATTTTTGCTGGCAAACAG 16982 >seq1915 Length=14346 Score = 123 bits (136), Expect = 2e-23 Identities = 114/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 139092 GTTGCACACCGCCACTTCGTCGGGG-TCGCTGTATTCGACAATTTCGGCACACAAATTAC 139150 ||| || || || ||||| || ||| ||| ||||| ||||| || | ||||||||||| Sbjct 10155 GTTACATACAGCAACTTCATCCGGGCTCGAA-TATTCAACAATCTCTGTACACAAATTAC 10213 Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210 |||| ||||| ||||| | |||||||||||| ||| || ||||||| ||||||||| | Sbjct 10214 TACATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTGTAGA 10273 Query 139211 GCATATACGGTGTGCCAGTTTC 139232 ||||||| ||||| || ||||| Sbjct 10274 GCATATATGGTGTACCCGTTTC 10295 >seq157 Length=142614 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || ||||| ||||| || ||||| || ||| Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || || ||| |||||| ||||| || |||||||| ||||| |||||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| || ||||| || || ||||| |||| ||| | | ||||||||||||| Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAAT 36670 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 36671 ATTCAAAAAGAATCAACTCTCCA 36693 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || ||||||||||| ||||| || ||||| || || | || || |||| Sbjct 37190 AAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGATACCATAGATCAA 37249 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| |||||| ||||| || ||||| || || || ||||||||||| |||||||| Sbjct 37250 GTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAACGCTTGATCTTC 37309 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| ||||| |||| ||| | | | || || ||||| |||||||||||||| Sbjct 37310 GCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATTCAAAAGGAATCA 37369 Query 24899 ACACTACA 24906 || || || Sbjct 37370 ACTCTCCA 37377 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| || ||||| || ||||| ||||| Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 37522 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || ||||| |||| ||| | | | || |||||||| Sbjct 37523 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 37582 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 37583 ATTCAAAAAGAATCTACTCTCCA 37605 >seq1895 Length=14547 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || || || ||| ||||||| ||| || ||||| ||| | | ||||| || ||| | Sbjct 4023 ATACAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCT 4082 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||||| || || ||| | | || ||||| |||||||| | ||||| |||| Sbjct 4083 GATACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAG 4142 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||||||||||||||||| || ||||| ||||| ||| Sbjct 4143 CAACGTTTGATCTTTGCTGGTAAACAACTGGAAGAT 4178 >seq81 Length=89240 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| | ||| | ||||||||| ||| ||||| || ||||| || || || | | Sbjct 50092 ATGCAAGTTTTTGTGAAAACGCTATTCGGAAAAACCATAACGCTTGATGTGAAATCAAAT 50151 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 | || | | ||| |||||||||||| ||||||||||||| || ||| | || || Sbjct 50152 AATACTATTGCTCAGGTTAAACAAAAGATCGAAGACAAAGAAGGTATTCCTACTGACCAG 50211 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || | ||| || | ||| | |||||| | | ||||||||||| Sbjct 50212 CAACGTATTATTTATGCTGGTACACAATTAGAGGATGATTACATCTTGTCAGATTATGGT 50271 Query 24884 ATTCAAAAGGAATCGAC 24900 || | |||||||| || Sbjct 50272 ATCTATAAGGAATCAAC 50288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449834226299320