Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2177 113 4e-20 seq188 107 2e-18 seq1319 102 7e-17 seq157 89.7 4e-13 >seq2177 Length=17275 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | || || ||||||||||| | ||| ||| || | Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| || |||||| ||||| ||||||||||| | ||| ||||| Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| || |||||||| || ||||||| |||| | | || ||||| Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || | || ||||| Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGTG 4410 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || || | |||||||||||||| ||| | || ||| | Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| ||| |||||| || ||| || || || || | ||| || || Sbjct 4033 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 4092 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| || |||||||| || ||||||| |||| | | || ||||| Sbjct 4093 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 4152 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 4153 ATTCAAAAAGAATCCAC 4169 >seq188 Length=104369 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 110267 TTTAAA-ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||||| |||||||| ||||| ||||| | || || ||||||||||| | ||| || Sbjct 83056 TTTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGA 83115 Query 110326 GCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT 110385 | |||||| ||| | || ||| | || ||| || |||||||| | ||| Sbjct 83116 AAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCC 83175 Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 |||||||||| | | || | ||| ||||||||| | || |||| | || | | || Sbjct 83176 GGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGA 83235 Query 110446 TTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| |||||||||||||| || || ||| |||| Sbjct 83236 TTACAATATTCAAAAAGAATCAACATTACACTTGGT 83271 >seq1319 Length=24104 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 |||||||| || || || ||| | ||||| ||||| ||||| | ||| ||| ||| | Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | ||| || ||| ||||||| |||||||||||| | ||| |||||| Sbjct 16668 -GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCA 16726 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| |||||||| |||| |||| | || || | |||||||| Sbjct 16727 GCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAA 16786 Query 110452 CATTCAAAAAGAATCTAC 110469 || |||||||| || || Sbjct 16787 TATCCAAAAAGAGTCAAC 16804 >seq157 Length=142614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||| ||||| || | || || |||||||||||| | ||| ||| | | Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | || || ||| |||||| || || ||||| | || |||||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || |||||||| |||| |||| | | || || | ||||| || Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAAT 36670 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 36671 ATTCAAAAAGAATCAAC 36687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412784899947617