Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq157 104 2e-17 seq2177 98.7 6e-16 >seq157 Length=142614 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||| ||||||||||||| | || |||| |||| ||| || ||||||||| Sbjct 37365 TCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAG 37306 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-GA 34905 |||| ||||| || ||| | || | || ||||| || | || ||| ||| || || Sbjct 37305 ATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 37246 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| | ||| || |||||| |||| || || || || || ||||||||||| || Sbjct 37245 T-CTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGAC 37187 Query 34966 AAAGAT 34971 || || Sbjct 37186 GAAAAT 37181 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || ||||| ||||| ||||||| | || |||| |||| ||| || || |||||| Sbjct 37593 TCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAG 37534 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| |||||||| ||| | || | || ||||| || | || ||| ||| || Sbjct 37533 ATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGG 37474 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||| | ||| || ||| || |||| ||| || || || || ||||||||||| || Sbjct 37473 TCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACG 37414 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 37413 AAAATTTGCAT 37403 >seq2177 Length=17275 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || |||| ||| || || ||||| || ||||| || ||| | || |||| Sbjct 4184 AGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCC 4125 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || ||||| || || |||||||||||| | || | |||||||| || Sbjct 4124 TCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCT 4065 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| || | || | || || ||| || || | ||| ||||| Sbjct 4064 TGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTT 4005 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| |||||||| ||||| ||||| Sbjct 4004 TTGCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || ||||||||||| || || ||| | || | || || ||||| || || ||||| Sbjct 3936 CTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAA 3877 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || |||||||||||| | || | || || ||||| | |||||| ||| || Sbjct 3876 AATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTG 3817 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | || || |||| ||| || |||||||| || ||||| || || Sbjct 3816 GTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAAC 3757 Query 34966 AAAGATCTGCATGATAGT 34983 ||||| |||||||| || Sbjct 3756 GAAGATTTGCATGATTGT 3739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325648069045511