Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq157 136 6e-27 seq1319 127 3e-24 seq188 125 1e-23 seq942 123 4e-23 seq2849 113 7e-20 seq38 109 9e-19 seq2177 102 1e-16 seq1895 93.3 7e-14 seq34 91.5 2e-13 seq364 87.8 3e-12 seq818 86.0 1e-11 >seq157 Length=142614 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | || || ||||| ||||| |||| || || || | Sbjct 36492 TGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATG 36551 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | | || ||| || || ||| ||| ||||| ||||| || ||||||| Sbjct 36552 ATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAAC 36611 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || || |||||||||||| Sbjct 36612 AACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAATA 36671 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 36672 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 36719 Score = 109 bits (120), Expect = 9e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 146035 AAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATA 146094 |||| ||| | || || | || || |||||||||||| |||| || || |||| Sbjct 37179 AAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGATA 37238 Query 146095 CTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAA 146154 | || | | || ||| || || ||| ||| ||||| || || || ||||||||| Sbjct 37239 CCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAAC 37298 Query 146155 GACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATAC 146214 | | || || || ||||||||||| || ||| | || ||| | || |||||||| | Sbjct 37299 GCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATTC 37358 Query 146215 AAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||| ||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 37359 AAAAGGAATCAACTCTCCATCTCGTACTTCGCTTAAGAGGTGGTA 37403 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||||||||| |||| || || | Sbjct 37404 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTG 37463 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| ||||| || ||||| | Sbjct 37464 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGC 37523 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | | || ||| | |||||||||| Sbjct 37524 AACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAATA 37583 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATA 146263 | ||||||||||| ||| ||||| | ||| | || | | || ||| |||| Sbjct 37584 TTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGTCAATA 37635 >seq1319 Length=24104 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | || || ||||| |||||| |||| ||||| | | | Sbjct 16609 TGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA- 16667 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || ||| || || ||| |||||||||||||| || ||||| Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 16727 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| ||||||||||| || ||| | || || ||||||| ||| Sbjct 16728 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 16787 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || |||||||| || ||| ||||| | || | || |||||||| |||| Sbjct 16788 ATCCAAAAAGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGTA 16836 >seq188 Length=104369 Score = 125 bits (138), Expect = 1e-23 Identities = 166/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || || ||||| |||||| | || || ||| || || Sbjct 83064 TGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCG 83123 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| | ||||| ||| ||||||||| || || || ||||||| Sbjct 83124 ATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAAC 83183 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACA----GATTAT 146207 || | | || ||||| |||||||| ||||| ||| | ||||| || ||||| Sbjct 83184 AACGTTTAATATTTGCTGGTAAACAGTTAGAAGAT----GGACGTTCACTTTCCGATTAC 83239 Query 146208 AATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||| ||||||||||| || | || || ||| | || ||| | || || Sbjct 83240 AATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 83289 >seq942 Length=78137 Score = 123 bits (136), Expect = 4e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 ||||||||||| |||||||| || || ||||| || || || ||||| ||| | | Sbjct 25260 AAAACATTAACTGGAAAAACTATAACAATTGAAGTCGAGTTTAGTGATACAATTGATCAA 25319 Query 146106 GTAAAAAATAAAATACAACT--TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 |||||| ||||| ||| |||||||| || ||||| |||||||||||| | |||| Sbjct 25320 TTAAAAACAAAAAT--TACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAATTT 25377 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 |||| ||||| ||| | || ||| | || |||| ||||| |||||| | || | Sbjct 25378 TTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGATGAGT 25437 Query 146224 CGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || | |||||||||||| ||||||| || || Sbjct 25438 CCACGCTACATTTAGTATTAAGATTAAGGGGTGG 25471 >seq2849 Length=14001 Score = 113 bits (124), Expect = 7e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||||||| | ||||||||||| || ||||| || || | || || | || ||| Sbjct 3973 CAAATATTCGTTAAAACATTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 4032 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || ||| | || ||||| | ||||| || ||||||| | || || | ||||||||| Sbjct 4033 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAAGGATACCTCTAGATCAACAA 4092 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 ||| | |||||||| |||| | | || ||| | |||||| | ||||| |||| Sbjct 4093 AGATTAATTTTTGCTGGTATGTCACTTGAAGATGGCCGTACGTTATCGGATTACGGTATA 4152 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAA 146250 |||||||||| || || ||| ||||||| || ||| Sbjct 4153 AAAAAAGAATCCACAATACATATAGTATTGAGACTAA 4189 >seq38 Length=163822 Score = 109 bits (120), Expect = 9e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 146129 AGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAA 146188 |||||| || || || ||||||||| | | || | || ||||||||| | || ||| | Sbjct 74513 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 74572 Query 146189 TAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 | | || ||| |||||||||||||||| | ||||| ||| | |||||||||||| |||| Sbjct 74573 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 74632 Query 146249 AAGAGGAGGT 146258 |||||| ||| Sbjct 74633 AAGAGGTGGT 74642 >seq2177 Length=17275 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || |||||||| | || || || || ||||| |||| || ||| ||| Sbjct 4430 TGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT- 4488 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || |||| ||||| ||| |||||| || || || || ||||| Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 4548 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | ||||| || ||||| ||||| || ||| | | || | | |||||||| Sbjct 4549 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 4608 Query 146211 ATACAAAAAGAATCGACT 146228 || ||||||||||| ||| Sbjct 4609 ATCCAAAAAGAATCAACT 4626 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || | || || ||||| || || | || ||||| | Sbjct 3974 TGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGG 4033 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| ||||| ||| ||| || || || || || || || | Sbjct 4034 ATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGC 4093 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || ||||||||| | || ||| |||| | | || || |||| Sbjct 4094 AACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATA 4153 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| ||| | ||| Sbjct 4154 TTCAAAAAGAATCCACTCTTCAT 4176 >seq1895 Length=14547 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||| || | ||||| ||| || ||||||||| | ||||| || || ||| Sbjct 4026 CAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCTGAT 4085 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || || || | || ||||| | ||| ||| ||||||||||| ||| || |||| ||| Sbjct 4086 ACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAGCAA 4145 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 | | || ||||| ||||||||| | || ||||| || || ||| |||||||||| Sbjct 4146 CGTTTGATCTTTGCTGGTAAACAACTGGAAGATAAACATACTTTGACACATTATAATATT 4205 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||| ||| | ||| | || | || ||||||| |||| Sbjct 4206 AGGGATAAATCAACTCTTCATCTCGTGCTCCGTCTAAGAGGTGGTA 4251 >seq34 Length=176868 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 146033 GCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACAT--AAC 146090 ||| ||||| | |||||| |||| ||||||||||| || | || || || | | Sbjct 50958 GCAGATATTTGTGAAAACACTAACTGGAAAAACAATAACATTGGAGGT--GACTTCGAGT 50901 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | || | |||| ||| || | |||||||| ||||| || |||||| Sbjct 50900 GATACAATTGACAAACTTAAAAGTAAGATTAATGACAAAGAAGGAATTCCTCCTGATCAA 50841 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || |||||||| || | ||||||||| || | || || |||||||| || Sbjct 50840 CAACGCCTTATTTTTGCTGGCATACAATTAGAAGACGGACGTACCTTGTCAGATTATCAT 50781 Query 146211 ATACAAAAAGA 146221 || || ||||| Sbjct 50780 ATCCACAAAGA 50770 >seq364 Length=140482 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 146035 AAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATA 146094 |||| || | |||||| | || ||||||||| ||| | ||| | || | ||| | Sbjct 21166 AAATTTTTGTGAAAACAATGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGCGACA 21107 Query 146095 CTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAA 146154 ||||| | | | ||| ||| | | |||||||||||||| || || || ||| Sbjct 21106 CTATTGATATGATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGCAAC 21047 Query 146155 GACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATAC 146214 | | |||||||| ||||| ||||| || ||| | ||| ||| ||||||||||||| | Sbjct 21046 GTATTATTTTTGCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTATAATATTC 20987 Query 146215 AAAAAGAATCGACTATCCATTTAGTA 146240 ||| ||| || || | ||| | ||| Sbjct 20986 AAAGAGAGTCTACGTTGCATCTTGTA 20961 >seq818 Length=79418 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146038 TATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTA 146097 ||||| | ||||||||||| || ||||| || || | ||||| || | ||| || || | Sbjct 29788 TATTCGTTAAAACATTAACGGGTAAAACTATAACAGTAGATGTTGATCTTAATGAAACAA 29847 Query 146098 TTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGAC 146157 || | | |||||| |||||| | ||| |||||||| || || ||||||||| | Sbjct 29848 TTGATCAGTTAAAAACGAAAATATATATTATTGAAGGCATACCGCCAAATCAACAAAAAT 29907 Query 146158 TCATTTTTGCAGGTAAA 146174 | |||||| | |||||| Sbjct 29908 TAATTTTTACCGGTAAA 29924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786055658635480