Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2177 140 2e-28 seq188 134 1e-26 seq1319 132 4e-26 seq157 132 4e-26 seq942 104 2e-17 seq1895 95.1 9e-15 seq2849 87.8 1e-12 seq34 82.4 6e-11 >seq2177 Length=17275 Score = 140 bits (154), Expect = 2e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| || || |||||||||||||||||||| | | ||| || Sbjct 3959 CGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCG 3900 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||||||||| | || | | |||||| || || ||||| || |||||| Sbjct 3899 TCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTG 3840 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||||| ||| || || | |||||| ||| ||| |||||||| || || Sbjct 3839 TCTTG-AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGAT 3781 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||||||||| || || ||||| Sbjct 3780 TGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || || ||||||||||| || || || | || ||| || Sbjct 4416 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 4357 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| || || | || | | ||||||||| || |||||||| ||||| Sbjct 4356 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 4297 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| || || | || || ||| || ||||| | ||| || Sbjct 4296 GTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAAT 4237 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| | ||||||||||| || ||||| Sbjct 4236 GGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || ||||||||||| ||||||||||||| || || ||| Sbjct 4644 ACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACC 4585 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | ||||| | ||||||||| || || ||||||||||| Sbjct 4584 ATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTT 4525 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| || || | || ||||| ||| || ||||| || | Sbjct 4524 ATCTTG-AATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAA 4466 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | ||||| ||||| || ||||| Sbjct 4465 TCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 4429 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| ||||||||||||||||| || || || | || ||| || Sbjct 4188 ACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCC 4129 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | || | | |||||| || || || |||||||| || Sbjct 4128 ATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTT 4069 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| || || | || || || ||||| || | || | Sbjct 4068 ATCTTG-AATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGA 4010 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || | || || || || || ||||| Sbjct 4009 TGGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 >seq188 Length=104369 Score = 134 bits (148), Expect = 1e-26 Identities = 166/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || ||||| || | || |||||||||||||| || ||||| | || | || Sbjct 83280 AAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGT 83221 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||||| |||||| |||| || | ||| |||||||| || || || ||| Sbjct 83220 CCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCT 83161 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || ||||| | ||||| |||||| | || | || || | ||| ||||| | ||| Sbjct 83160 TTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTA 83101 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT-TTTAAAA 29793 || ||||| ||||| | ||||||||||| || ||||| ||||||| Sbjct 83100 ATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAAA 83055 >seq1319 Length=24104 Score = 132 bits (146), Expect = 4e-26 Identities = 119/147 (81%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700 |||||||||||| | ||||||||||| ||||| || || ||||| ||||||||||| ||| Sbjct 16981 TGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTG-AAT 16923 Query 29701 TTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 ||||| ||||| ||| | || |||||| ||| ||||||||||| |||||||| || Sbjct 16922 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 16863 Query 29760 AGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||| |||||||| Sbjct 16862 GGTGAGGGTCTTTACAAAAATCTGCAT 16836 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| ||||| | ||| || || || |||||||| || || ||||| | Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || | |||||| || ||| | ||||| | |||||||||||| ||| Sbjct 16774 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 16715 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | ||| || || | || || || ||||| Sbjct 16714 ATGCCTTCTTTGTCTTG-AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 16656 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| |||||||| || || | || ||||| || || ||||| Sbjct 16655 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq157 Length=142614 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| || |||| | ||| || || | ||| || || |||||||||||||| |||||||| Sbjct 37633 TTGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATC 37574 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 || | || ||| ||| || | |||||| ||||| | ||||| | ||||||||| || Sbjct 37573 CGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGG 37514 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 |||||||| || || ||||| ||| |||| ||| || |||| || ||||| | Sbjct 37513 AGGAATACCTTCCTTATCTTG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACT 37455 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || || ||||| || || | ||| || || || || ||||| Sbjct 37454 CAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || || | ||| || || |||||||||||||| |||||||| | Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 36658 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| ||||| | || || | ||| ||||| || ||| Sbjct 36657 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 36598 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| ||| |||| ||| || || | || ||| || || Sbjct 36597 ATTCCTTCCTTATCTTG-AATCTTTGCTTTAACTTGATCAATGGTATCATTGGACTCGAC 36539 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || ||||| ||||| | ||| || || ||||| ||||| Sbjct 36538 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || || || || || | ||| || || ||||| |||||||| ||||| |||| Sbjct 37401 CCACCTCTTAAGCGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 37342 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| || || | ||||| | ||| ||||| || || Sbjct 37341 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 37282 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || || ||||| ||| |||| ||| || |||| || ||||| || || Sbjct 37281 ATACCTTCCTTATCTTG-AATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 37223 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780 ||||||||| || ||||| || || | ||| || || || || Sbjct 37222 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAAT 37181 >seq942 Length=78137 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| || | | || ||||| |||||||| || | || || ||||| Sbjct 25471 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCATCACATATATTGTAATCACTT 25412 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || ||||| || |||||| | || |||||||| ||||| || || Sbjct 25411 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 25352 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| || ||||||||||||| | | || | || ||| || || || Sbjct 25351 ATACCTTCTTTTTCA-GTAATTTTTGTTTTTAATTGATCAATTGTATCACTAAACTCGAC 25293 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 ||||| ||||||||||| |||||||| |||||||| Sbjct 25292 TTCAATTGTTATAGTTTTTCCAGTTAATGTTTTAAC 25257 >seq1895 Length=14547 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| ||||| | |||||| || |||| | ||| ||||||| | Sbjct 4249 CCACCTCTTAGACGGAGCACGAGATGAAGAGTTGATTTATCCCTAATATTATAATGTGTC 4190 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || |||||||| |||||| | ||||| | |||||||| || ||| Sbjct 4189 AAAGTATGTTTATCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGA 4130 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | || ||||| ||||| | | | | ||| || || || || ||||| || ||| Sbjct 4129 GTGCCTTCTTTATCTTGAATTATGTTTTTCACTTCTTTAACTGTATCAGAGGCATCAACT 4070 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || ||||||||| ||| ||||||||||| || || || Sbjct 4069 TCAATGGCAATTGTTTTGCCACTTACAGTTTTAACAAAAATTTGTAT 4023 >seq2849 Length=14001 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||||||||||| || ||||||| | || || ||| || ||| | ||| Sbjct 4166 GTGGATTCTTTTTTTATACCGTAATCCGATAACGTACGGCCATCTTCAAGTGACATACCA 4107 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTG 29709 ||| | || |||||||| ||||| | || || | ||||| || || | ||||| ||| Sbjct 4106 GCAAAAATTAATCTTTGTTGATCTAGAGGTATCCTTTCTTTATCCTGAATTTTTTCTTTT 4047 Query 29710 ACAGTTTCTACAGTGT--CAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGG 29767 | | || || | ||| || || | || ||| || ||||||||||| |||||||| | Sbjct 4046 A--GGTTATAAATTGTATCACTAAAATTTAATTCTAGTGTTATAGTTTTACCAGTTAATG 3989 Query 29768 TTTTAACAAATATCTG 29783 ||||||| ||||| || Sbjct 3988 TTTTAACGAATATTTG 3973 >seq34 Length=176868 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/206 (70%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 ||||| ||| | ||||| || || | |||||| | | ||| || || || | ||| Sbjct 50757 ATGAAATGTGCACTCTTTGTGGATATGATAATCTGACAAGGTACGTCCGTCTTCTAATTG 50816 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 | |||||||| | || | | ||| ||||| || ||||| || |||||||| | |||| | Sbjct 50817 TATGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTCTTTGTCAT-TAATCT 50875 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGA----AAGTTCTACTTCAAGAGTTATAGTTTTGC 29758 | ||| | ||||| | | ||| | |||| || || | ||||| ||||| | Sbjct 50876 TACTTTTA-AGTTTGTCAATTGTATCACTCGAAGTC--ACCTCCAATGTTATTGTTTTTC 50932 Query 29759 CAGTTAAGGTTTTAACAAATATCTGC 29784 |||||| ||||| |||||||||||| Sbjct 50933 CAGTTAGTGTTTTCACAAATATCTGC 50958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385166293633929