Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq206 143 3e-29 seq1441 84.2 3e-11 >seq206 Length=70616 Score = 143 bits (158), Expect = 3e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 ||||| | |||||| ||||||||||| || || ||||| |||| || | |||| Sbjct 45030 AAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGGTA 45089 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 || | ||||| | | ||||||||||||||||| ||| ||| | ||| | | | | Sbjct 45090 TTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACATA 45149 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 |||||||||||||||| ||||| |||||||||| |||||||||||| || ||| | | Sbjct 45150 GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAGT 45209 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAA 171834 | || || || |||| |||||||| || |||| || || ||| Sbjct 45210 ACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCAA 45253 >seq1441 Length=33686 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 192996 ATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193054 ||||| ||| |||| |||||||||| ||| | |||| | ||||||| || ||||| Sbjct 26247 ATACCAGAATTAGGAGATAAATTTTCTTCACGTCATGGAC-AAAAAGGTGTATGCGGTAT 26189 Query 193055 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 193114 ||| |||||||||||||||||||| | ||| ||||| || |||||||| || Sbjct 26188 TATTGTACCACAAGAAGATATGCCATTTGCTGATTCTGGTATATGTCCTGATATTATCAT 26129 Query 193115 TAATCCAAATTGTATTCCGTCCAGAATGAC 193144 |||||| || | |||| || | ||||| Sbjct 26128 GAATCCACATGGATTTCCTTCACGTATGAC 26099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628442663523840