Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1915 190 5e-43 seq2 118 3e-21 seq14 95.1 3e-14 seq99 93.3 1e-13 seq328 89.7 1e-12 >seq1915 Length=14346 Score = 190 bits (210), Expect = 5e-43 Identities = 436/652 (67%), Gaps = 7/652 (1%) Strand=Plus/Minus Query 110258 AAAACTAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAA 110317 |||||| ||| || ||| |||| | | || ||| | | | |||||||| || || Sbjct 11174 AAAACTTAATTCTACGATCATTTATGATAGAGATTATAAATATAATTATTTTGGATTTAA 11115 Query 110318 AACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACA 110377 |||||||||| | ||||| | | || | ||| | | ||| ||||| ||||| Sbjct 11114 AACTCTTGAAAGATCTTATCTTTTACGAATAGGTGGAAAAGTTGCTGAGCGTCCCCAACA 11055 Query 110378 CATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATG 110437 ||| || | || || ||| |||| ||||| ||| ||||||| |||||| ||||||| Sbjct 11054 TATGCTTATGCGCGTAGCGGTTGGGATTCACGGAGATGATATCGAAGCTGCTATTGAAAC 10995 Query 110438 TTATGATGT-AT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCA 110495 ||| || | || | || ||||| || ||| || |||| || | ||||| || Sbjct 10994 TTACAATCTGATGTCAG--AAAAGTTCTTTACTCACGCATCTCCGACTTTGTTTAATGCT 10937 Query 110496 GGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATT 110555 || || | || ||| | | ||| |||||| || || || |||||||| || Sbjct 10936 GGCACACCTAGACCTCAACTTTCGAGTTGTTTTCTTTTAACTATGAAAGATGATTCAATA 10877 Query 110556 GAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATT 110615 || || || |||||| || | ||| | || | |||||||| | | || || ||| Sbjct 10876 GAGGGAATCTATGATACTTTGAAAACATGCGCAATGATTTCTAAGACTGCAGGTGGTATT 10817 Query 110616 GGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCT 110675 ||| | || ||||| | ||||| | | |||| | |||| || | | || ||| | Sbjct 10816 GGTGTGAACATTCATAACATTCGTGCGACAGGATCTTATATTGCTGGAACAAATGGTTAT 10757 Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| |||| || |||| |||||| | || | || | || || | |||||| ||||| Sbjct 10756 TCAAATGGAATTATTCCTATGTTACGCGTTTATAATAATACCGCTAGATATGTTGATCAA 10697 Query 110736 GGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 || || || | | | ||| | |||||||| ||| | ||| | |||||| | || || Sbjct 10696 GGAGGAAACAAACGTCCGGGCGCGTTTGCTATTTATTTAGAAACGTGGCATCCTGACATT 10637 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 ||||| || | || | |||||| ||| |||||| | ||||| |||||| Sbjct 10636 TTTGATTTTATGGATTTAAAAAAAAATACTGGAAAAGAAGAAGTTCGTGCACGGGATTTA 10577 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG 110904 ||||||||| | ||| |||| ||| | || |||||| | ||| || ||||| Sbjct 10576 TTTTATGCACTTTGGGTTTCGGATCTTTTTATGAAAAGGGTTGAATCAAATG 10525 >seq2 Length=211661 Score = 118 bits (130), Expect = 3e-21 Identities = 330/500 (66%), Gaps = 10/500 (2%) Strand=Plus/Minus Query 131800 AAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAG 131859 ||| ||||| || |||||| || ||||||| ||| | || ||| || | | Sbjct 205154 AAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATCTTCATTTGCTGAACG 205095 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 |||||||| ||||| ||||||||| ||||||||||| || |||||| | ||||| Sbjct 205094 TCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTT 205035 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 |||| | ||||| | ||| ||||||| ||| | | || ||||| || | || || | Sbjct 205034 TTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCG 204975 Query 131980 AGATGAAGCATTGCATACTGAATTTGC---TATATTAATCTATAGAAAATTTGCTG-ATA 132035 |||||||| ||||||| ||| ||||| | | ||| || | | || || | Sbjct 204974 AGATGAAGGATTGCATTGTGATTTTGCATGTCTCTTATTC---ACTCATCTTCATGCACG 204918 Query 132036 AACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGT 132095 | || | |||| | | | || ||||| ||||| ||| || || | || | Sbjct 204917 ACCTCCAACAAAA-ACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAAT 204859 Query 132096 TTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGT 132155 || | |||||||| || || ||||| ||||| ||||| || | | ||||| | | Sbjct 204858 TTTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAAT 204799 Query 132156 ACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATT-TATAAC 132214 | |||||||| || |||||| | ||| | |||||| | ||| ||| ||||| Sbjct 204798 ATATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGG-TGGAGCAAAATTGTATAAT 204740 Query 132215 ACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTC 132274 | | || || | | | ||||| | |||| | |||||||||| || ||||| Sbjct 204739 TCAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAGGTAAAACAAATTTCTTT 204680 Query 132275 GAAAGTCGTGTATCTGAGTA 132294 |||| || ||||| || || Sbjct 204679 GAAAAACGCGTATCAGATTA 204660 >seq14 Length=144294 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 304894 TCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCATCTCAAAGA 304951 |||| |||||| | ||||||||||| || ||||| || | || |||| |||| | Sbjct 52179 TCATTGTGCAACTTATATGGATAATGAGATGGCTGGTCAACCA--CAAGCATTACAAAAA 52122 Query 304952 TCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGA 305011 ||||| ||||||||||| || || ||| | || |||||||| || ||| |||| Sbjct 52121 TCTGGTAGACCTTTAAAATCAATCAGAGCACGTCTCAAGGGTAAAGAAGGACGTCTTCGT 52062 Query 305012 GGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCT 305071 || ||||||||||| |||||||| || ||| ||| | | || || || ||| | Sbjct 52061 GGAAATCTAATGGGTAAACGTGTAGACTTTTCTGCTCGTACAGTTATTACGGGAGATCCG 52002 Query 305072 CAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCA 305131 | || | ||||| | |||||||||| || |||| ||| |||| ||||| Sbjct 52001 AATATATCAGTAGATGAAGTTGGAGTTCCAAAAAGTATAGCTTCAAATTTAACTTTTCCT 51942 Query 305132 GAGAAAGT 305139 || | ||| Sbjct 51941 GAAATAGT 51934 >seq99 Length=84919 Score = 93.3 bits (102), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||||| || |||| | ||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 19268 ACTTTTCGTTTTAATGAATGTGTTTGTAGTCCTTATAATGCAGATTTTGATGGTGATGAA 19209 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | |||||||||||| Sbjct 19208 ATGAATCTTCATGTACCTCAA 19188 >seq328 Length=70815 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 |||||| | ||||| ||||||||||| || || ||| |||| |||||| ||| || Sbjct 17006 GGTATTGCTAAACTGGATGATGCAAATAATGCCGGCGGTAAAAAATGTCAAGATTGTACT 16947 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 ||| | |||||||| || |||||||| | || || |||| || || ||| | || Sbjct 16946 TTAATCCTTACTGAAGGCGATTCTGCAAAGGCTTTGGCAGTTGCCGGATTTTCTATAGTT 16887 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241 |||||||| || ||||| || || || | | || ||| || | |||| | | ||| Sbjct 16886 GGTCGTGACAATTATGGAGTTTTCCCGCTTCGTGGGAAATTATTAAATGTTAGGGAT 16830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186641443146509