Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2177 109 1e-18 seq1319 107 5e-18 seq188 93.3 1e-13 seq157 89.7 1e-12 >seq2177 Length=17275 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| | ||||| ||| ||| ||||| | || | Sbjct 3760 AAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGACACTATTGACCAA 3819 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| |||||||||||| || ||| ||| | ||||| || Sbjct 3820 GTTAAAGCAAAA-ATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAACGTCTTATTTT 3878 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || | ||||| || | || | | ||||| ||| | || |||||||| Sbjct 3879 CGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAACATTCAAAAAGAGTC 3938 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || | ||||||| Sbjct 3939 AACTCTTCATCTAGTACTTCGACTTCG 3965 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| |||||||| || ||||||||||| || ||| || || |||| | Sbjct 4216 AAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCCGATACCATCGATCAA 4275 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||| ||||| |||||||| ||| || || ||| | || || ||| Sbjct 4276 GTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAGCAACGTCTCATTTTC 4335 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | || |||||| | || | | || ||||| | || |||||||| Sbjct 4336 GCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAATATTCAAAAAGAGTCA 4395 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 4396 ACACTTCA 4403 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || ||||| || | || || ||| ||||| || | || ||| Sbjct 4444 AAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCTGATACCATTGA-TCA 4502 Query 206245 G--TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | |||| | ||| |||||||| ||||| || || || || ||| | | || | Sbjct 4503 GGTTAAAACCAAA-ATTCAAGATAAAGAGGGTATCCCTCCAGATCAGCAACGTTTGATTT 4561 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || ||||| ||||||||||| | ||| | | ||||| ||| |||| ||||| | Sbjct 4562 TCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAACATCCAAAAAGAAT 4621 Query 206363 CTACTCTTCACCTTGT 206378 | ||||||||||| || Sbjct 4622 CAACTCTTCACCTCGT 4637 >seq1319 Length=24104 Score = 107 bits (118), Expect = 5e-18 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||||||||| |||||||| |||| ||||||||| | |||||| | ||||||||| Sbjct 16589 AACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCTTC 16530 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||| || || |||||||| | ||||| ||| Sbjct 16529 CAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGA 16496 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || ||| | ||||| || || || || | || | Sbjct 16623 AAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCAGATACCATTGACCAA 16682 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| ||| ||||| ||| | | ||||| Sbjct 16683 GTTAAAGCGAA-GATTCAAGACAAAGAAGGCATTCCCCCGGATCAGCAACGCTTGATCTT 16741 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || |||||||||||| | || ||| | |||||||| |||| |||||||| Sbjct 16742 TGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAATATCCAAAAAGAGTC 16801 Query 206364 TACTCTTCACCTTGT 206378 ||||| || || || Sbjct 16802 AACTCTCCATCTCGT 16816 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| ||||||||||| | |||||| |||| || || |||| ||| Sbjct 16509 ATCTTCGCTGGTAAACAGCTGGAAGATGGACGTACTTTGTCCGACTATAATATCCAAAAA 16568 Query 206359 GAGTCTACTCTTCACCTTGTT 206379 ||||| ||||||||||||||| Sbjct 16569 GAGTCAACTCTTCACCTTGTT 16589 >seq188 Length=104369 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||| ||||| |||||| || || |||| | Sbjct 83078 AAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCGATACCATCGATAAA 83137 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || |||| |||||||| ||||||||||| ||||| ||| | | || || Sbjct 83138 GTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAACAACGTTTAATATTT 83197 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAG--GACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 || || || ||||| ||||||||| | ||||| |||||||||| | || ||||| | Sbjct 83198 GCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCGATTACAATATTCAAAAAGAAT 83255 Query 206363 CTAC 206366 | || Sbjct 83256 CAAC 83259 >seq157 Length=142614 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| || || | ||||| || ||||| || | || Sbjct 37417 CAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTGATACCATAGACCA 37476 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 ||| |||||||| ||||||||| || ||||| ||| || || ||| | | |||| Sbjct 37477 AGTTAAAGCAAA-GATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCAACGCTTGATCT 37535 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || || || ||||||||||| | ||||| | ||||| || | || ||||| | Sbjct 37536 TCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAATATTCAAAAAGAAT 37595 Query 206363 CTACTCTTCACCTTGT 206378 ||||||| || || || Sbjct 37596 CTACTCTCCATCTCGT 37611 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTC--TG 206230 || ||||| ||| || || || || ||||| || || | ||||| || || | || Sbjct 36494 CAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGA--GTCCAATG 36551 Query 206231 ACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 | || | || ||| |||||||| ||||||||| || ||||||||| || || Sbjct 36552 ATACCATTGATCAAGTTAAAGCAAA-GATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | | |||||||| || || || ||||||||||| | |||||| | ||||| || Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAAT 36670 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 | || ||||| || ||||| || || || Sbjct 36671 ATTCAAAAAGAATCAACTCTCCATCTCGT 36699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181650163911749