Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq188 118 1e-21 seq2177 116 4e-21 seq1319 105 6e-18 seq157 96.9 3e-15 seq1915 86.0 6e-12 seq942 86.0 6e-12 >seq188 Length=104369 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| |||| ||||||||||| ||||| ||| | | ||| |||||| Sbjct 83271 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 83212 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||||||| | | | |||| ||| |||||||| || || || ||||||||||| | Sbjct 83211 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 83152 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||||| ||| | | || | |||||| | || ||||| | || | |||||| Sbjct 83151 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 83092 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | ||||| |||||| Sbjct 83091 CCAGTAAGTGTTTTAACAAAAATTTGCATG 83062 >seq2177 Length=17275 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||||||||||||||| |||||||| | ||| || ||| || Sbjct 4409 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 4350 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| | || ||||| || |||||||| || || |||||||| || Sbjct 4349 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGG 4290 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||| | || || | ||||||| | ||| ||||| | || | ||||| Sbjct 4289 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 4230 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | ||||| ||||| Sbjct 4229 CCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||||||||| || || | |||||| ||||| || ||||| || | Sbjct 3940 TTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCAAGTTGTTTGCCAG 3881 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || ||||| || || ||||| || || |||||||| || ||||||| ||| | Sbjct 3880 CGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAA 3821 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||| |||| | || ||||| | || | || || || || || |||| Sbjct 3820 CTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTT 3761 Query 132108 TTATGAAAATCTGCATGA 132125 | | ||| || ||||||| Sbjct 3760 TAACGAAGATTTGCATGA 3743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| |||||||| ||||| || || | ||||| |||||| | || ||||| | Sbjct 4624 TTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAG 4565 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || | ||| || ||||||||||| || || |||||||| |||||| ||| | Sbjct 4564 CGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAA 4505 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 ||| || | ||||| | | || || || | || | ||| |||||||| || |||| Sbjct 4504 CCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTT 4445 Query 132108 TTATGAAAATCTGCAT 132123 ||| ||||| ||||| Sbjct 4444 TTACAAAAATTTGCAT 4429 >seq1319 Length=24104 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||| || ||||| || || |||||| |||||| | |||||||||| Sbjct 16803 TTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGG 16744 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | || || ||||| || || ||||||||||| || ||| || ||| | Sbjct 16743 CAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAA 16684 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || ||||| | Sbjct 16683 CTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCT 16624 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 16623 TAACGAAAATTTGCAT 16608 >seq157 Length=142614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || ||||| |||||| | |||||||| | Sbjct 36686 TTGATTCTTTTTGAATATTATAATCTGACAAAGTACGGCCATCTTCCAATTGTTTACCAG 36627 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||||| || |||||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 36626 CGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAA 36567 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | ||||| ||||| || || | Sbjct 36566 CTTGATCAATGGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCT 36507 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| || ||||| Sbjct 36506 TGACGAATATTTGCAT 36491 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || |||||||| || ||||| | ||||| |||||| | |||||||||| Sbjct 37370 TTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGG 37311 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || ||||||||||| || || ||||| ||||| ||| ||| ||| | Sbjct 37310 CGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAA 37251 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || || || | Sbjct 37250 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCT 37191 Query 132108 TTATGAAAAT 132117 | | |||||| Sbjct 37190 TGACGAAAAT 37181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || || | ||||| |||||| | |||||||| | Sbjct 37596 GATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCG 37537 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || || ||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 37536 AAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACT 37477 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| || || || || Sbjct 37476 TGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTG 37417 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 37416 ACGAAAATTTGCAT 37403 >seq1915 Length=14346 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 || || | |||||| ||||| || || ||||||| | || | ||||| || |||| Sbjct 9424 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 9483 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 |||||| | |||||| ||| |||||||||| || | ||| |||||||| || | | Sbjct 9484 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 9543 Query 147013 AACAATGAATTTCGCAGACC 147032 || ||||||||||| | ||| Sbjct 9544 AATAATGAATTTCGTACACC 9563 >seq942 Length=78137 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 131942 ATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGC 132001 || ||||| || || | ||||| |||||| || || ||||| | | | |||| | Sbjct 25426 ATATTGTAATCACTTAAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTT 25367 Query 132002 TGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTA 132061 ||||||||||| ||||| |||||||| || ||||||||| ||| || || || | ||| Sbjct 25366 TGTTGATCTGGTGGTATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTA 25307 Query 132062 TCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 || | ||| ||||| | || | ||||| ||||| | ||||| Sbjct 25306 TCACTAAACTCGACTTCAATTGTTATAGTTTTTCCAGTTAATGTTTT 25260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476544063354840