Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq942 138 1e-27 seq2177 129 5e-25 seq188 107 2e-18 seq157 95.1 1e-14 seq1319 84.2 2e-11 >seq942 Length=78137 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 25181 GTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACT 25240 |||| || ||||||||||| |||||| | || || || |||||||| | ||||| Sbjct 25251 GTGTACGTTAAAACATTAACTGGAAAAACTATAACAATTGAAGTCGAGTTTAGTGATACA 25310 Query 25241 ATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGA 25300 || || ||| ||||| ||||||||| || ||||| |||||||| || ||||| |||||| Sbjct 25311 ATTGATCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGA 25370 Query 25301 CTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAA 25360 | |||| | || || ||||| ||||||| | | | | || ||||||||||| Sbjct 25371 TTAATTTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGT 25430 Query 25361 AAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||| | |||||||| |||||||| || || || Sbjct 25431 GATGAGTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG 25471 >seq2177 Length=17275 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| || | ||||| ||| | ||||| | || || || || Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| ||||||||| |||||| ||||| |||||||| || || || ||| Sbjct 4033 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 4092 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||||| || |||| ||| | ||| |||||| Sbjct 4093 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 4152 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||||||| ||||| Sbjct 4153 ATTCAAAAAGAATCCACTCTTCAT 4176 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || |||||| | || || | ||||| || | | Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| ||||||||| ||| || || ||||| ||||| || || |||||| Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||| |||||||| || |||| ||| | || |||||| Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||| || || ||||||| ||| Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGTG 4410 Score = 118 bits (130), Expect = 9e-22 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25164 AATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAG 25223 |||||| | ||||||| | || || ||||| | |||||||| | ||||| | |||| Sbjct 3734 AATTAACAATCATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAG 3793 Query 25224 TCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATAC 25283 | ||| | ||| ||||| || ||||| ||| ||||||| || ||||| || || | Sbjct 3794 TTGAATCTTCCGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTC 3853 Query 25284 CGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCA 25343 | || || |||||| | || |||| || ||||||||||| ||||| | | | || Sbjct 3854 CCCCAGACCAGCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCT 3913 Query 25344 GCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| || ||||||||||| || || ||||| |||| Sbjct 3914 CAGATTATAACATTCAAAAAGAGTCAACTCTTCATCTAGT 3953 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| | || || || |||| || | || |||||| | Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || || || ||| |||||| |||||||||||||| || || |||||| Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 4548 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || || || ||| | ||||||| | | | | | ||||| || Sbjct 4549 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 4608 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || ||||||||||| || |||| Sbjct 4609 ATCCAAAAAGAATCAACTCTTCA 4631 >seq188 Length=104369 Score = 107 bits (118), Expect = 2e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | ||||| |||||| | || || ||| | || || | ||||| ||| Sbjct 83060 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 83119 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | |||||| ||||| |||| ||| |||||||| |||||||| || || || || ||| Sbjct 83120 AGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGAT 83179 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATT 25349 || ||| | | || | | || ||||| | ||||||| | | | || ||||| Sbjct 83180 CAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC--CGATT 83237 Query 25350 ACAATATTCAAAAAGAATCCAC 25371 ||||||||||||||||||| || Sbjct 83238 ACAATATTCAAAAAGAATCAAC 83259 >seq157 Length=142614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | ||||| || || Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| ||||| || ||||| || || |||||| Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 37522 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || || |||||| | ||||||| | | | | | ||||| ||| Sbjct 37523 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 37582 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||||||||| || Sbjct 37583 ATTCAAAAAGAATCTAC 37599 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | |||||||| |||| Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| ||||| || || || || || ||||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | ||||| |||| | Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAG--ATTATA 36668 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||||||||||||||| || Sbjct 36669 ATATTCAAAAAGAATCAAC 36687 >seq1319 Length=24104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | ||||| || || Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| || ||| || ||||| || || || || |||||| Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 16727 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | | ||| |||||| | ||||||| | | |||||| |||||| Sbjct 16728 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAG--ATTACA 16785 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| |||||||| || || | ||| | ||| | | || ||||| || Sbjct 16786 ATATCCAAAAAGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 16834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445031702890080