Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1915 423 3e-113 seq2 185 1e-41 seq904 105 9e-18 >seq1915 Length=14346 Score = 423 bits (468), Expect = 3e-113 Identities = 696/989 (70%), Gaps = 16/989 (2%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA-CACATCAATG 69574 ||| |||||||| ||||||||||| || |||||| |||| ||| || || || Sbjct 10457 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 10516 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| ||||| | ||| | ||||||||| ||||| | || |||||| || || Sbjct 10517 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 10575 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | ||| | | | | |||||| ||||| ||||||||||| | ||| | ||| || | Sbjct 10576 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 10635 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| ||||||| Sbjct 10636 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 10695 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | ||||| | ||||| || || |||||||| || | | ||| |||||||| ||||| | Sbjct 10696 CTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTTG 10755 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | | |||||||||||||| ||||||| |||| | || ||||| ||| ||| | || Sbjct 10756 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 10815 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || || ||||| | ||||| || | || || |||||| || ||||| || |||| Sbjct 10816 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 10875 Query 69935 CTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTA-TAGT 69992 |||| ||||||| |||| ||||| ||||||||| || || | |||| | | || || Sbjct 10876 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGA-GGTCTAGGTGT 10933 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 || |||||||| || || |||||||||||||| || | ||||| || | ||||||||| Sbjct 10934 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 10993 Query 70053 TGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 ||||||||||| | ||| ||||| | | | ||||| || | ||| || ||||| | || Sbjct 10994 AGTTTCAATAGCAGCTTCGATATCATCTCCG-TGAATCCCAACCGCTACGCGCATAAGCA 11052 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 |||| || || || || | ||| | |||| || || || ||| |||| |||| Sbjct 11053 TATGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAG 11112 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 ||||||| |||||||| || ||| | | ||||| || ||||| || |||||| |||| Sbjct 11113 TTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTT 11172 Query 70232 TATCCTTATATTTGGTAACTATATCCATAACAGTAGGT---GAGATAATCGGAGATCGTT 70288 | ||| || || | || |||| || ||| | || || || | | |||| Sbjct 11173 TTTCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTT 11229 Query 70289 TACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttt 70348 | || |||| ||||| | ||| || | | |||||| | |||| ||| | ||||| Sbjct 11230 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 11289 Query 70349 ttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGAT 70408 | ||||| || || | ||| || | || || | || || || | |||||||| |||| Sbjct 11290 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 11349 Query 70409 GTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTA 70467 ||| || || || || || || |||| ||||| || |||||||||| | ||| || Sbjct 11350 GTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 11408 Query 70468 ACTCCGTTATATAGCCCTTGAATAACTTT 70496 || || | ||| | ||| ||| || || Sbjct 11409 ACACCTTGATAAACTCCTGAAATGACCTT 11437 Score = 172 bits (190), Expect = 8e-38 Identities = 277/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 || ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 9421 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 9480 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 ||||| | | |||||||| |||| ||||| | ||| |||||||| ||||| ||||| Sbjct 9481 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 9540 Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCC 68886 | |||||| ||||| | ||||||| | ||||| | ||| | ||||||||| Sbjct 9541 AGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCC 9600 Query 68887 CAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATAT 68946 || | ||||| || |||||||||| | ||||||||||| ||| || || | | Sbjct 9601 CATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGGT 9660 Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||| | ||||| || || | || | ||||||||| ||| |||||| Sbjct 9661 GATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAAT 9720 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| | ||| ||||| || || || | |||||| || || | ||| || | ||| Sbjct 9721 GCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGAATCA 9780 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 ||| || | | | | || || | |||||| ||||| Sbjct 9781 AATTGAATACGCATAGCAAGGAAAGTATCTGCTAATCC 9818 Score = 105 bits (116), Expect = 9e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 ||||||||| || ||||| | || | ||||| || || || |||| | | | Sbjct 10125 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 10184 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| | ||||||||||| | ||||||||||||||| || || |||||||| ||||| Sbjct 10185 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 10244 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 | || ||||| | || ||||| || ||| | || ||||| ||||| ||||| || Sbjct 10245 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 10304 Query 69435 TTCGATAATAGATTTCCAAAC 69455 ||| | ||| | | |||| || Sbjct 10305 TTCAAGAATTGCTGTCCAGAC 10325 >seq2 Length=211661 Score = 185 bits (204), Expect = 1e-41 Identities = 207/275 (75%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| Sbjct 205318 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 205377 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | |||||| || || || ||| | |||| | ||||||||||| || || ||||| Sbjct 205378 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 205437 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA--- 40084 || ||||| || ||||| || || |||||| ||||||| || | | |||| Sbjct 205438 GCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATAC 205497 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | ||| ||||| ||||| || || | || ||||| ||| | |||||||| || || || Sbjct 205498 TCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTCG 205557 Query 40145 GCCTTTTTGTACATGTTCCATATAT-CACGATATT 40178 |||||||||||||| | ||| || | ||| ||||| Sbjct 205558 GCCTTTTTGTACATTTGCCAGATCTACACAATATT 205592 Score = 141 bits (156), Expect = 1e-28 Identities = 310/457 (68%), Gaps = 8/457 (2%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||| |||||| || || |||||||| || || ||||| ||||| |||| Sbjct 204641 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 204700 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || ||||| |||||||| ||||| || |||||| |||| || Sbjct 204701 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACC 204760 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCACAAT 39491 | | | | |||||||| || |||||||| || ||| ||||||| | ||| | | Sbjct 204761 AAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-T 204819 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || || | |||||||||| || || |||| ||| |||| ||| || || | Sbjct 204820 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 204879 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA--TGCAATAA-ATGTTTAA 39608 | || | ||| || | | ||| | | | | || || |||| || ||| | | Sbjct 204880 CTTCCGCTATAATAGCTTCTAC-AGTTTTTG--TTGGAGGTCGTGCATGAAGATGAGTGA 204936 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | | | || || || |||||||| | || ||||||| | ||||| |||||| |||| Sbjct 204937 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 204996 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | || | ||| ||||| | || | || || | |||||| || | || |||| ||||| Sbjct 204997 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 205056 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||| || ||||| || || ||||| || ||||| Sbjct 205057 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 205093 >seq904 Length=34060 Score = 105 bits (116), Expect = 9e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||||||||| |||| | | | ||| ||||| |||||||| | | || || ||| Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||||| || || ||| ||| ||||| || |||| || || | | ||| || |||||| Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 ||||||| || ||||| | ||||||||| || | |||||||||||||| || || Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 70120 GGTCGTTCTAC 70130 |||| ||| || Sbjct 10984 GGTCTTTCAAC 10994 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 68713 ACTATTTGAAATTCCCCAGATAACAC---TCTACGAGTGTAAATATTACTGGTATATGGT 68769 |||| ||||||||||||| ||| || ||| || |||||||| || || |||||| Sbjct 9114 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 9170 Query 68770 TCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACC 68829 || | ||||||| ||||| ||||| ||| || |||||||| ||||| ||||| | | Sbjct 9171 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 9230 Query 68830 AATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAA 68889 || ||| ||||| | |||| | |||| || ||||| | | | ||| ||||| Sbjct 9231 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 9290 Query 68890 AGATCAGATGGT 68901 |||| || ||| Sbjct 9291 CGATCTGAAGGT 9302 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/258 (67%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 |||||||||||||| || ||||||||||||||| ||||||||||| ||| || Sbjct 9687 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 9746 Query 69184 ATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 69242 | |||||| | ||| | || |||||| | | || | || || | |||||||| Sbjct 9747 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 9806 Query 69243 -TCGTCCATCT----ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCT 69297 | || || | ||||||| || | || | || |||| ||||||||| ||| Sbjct 9807 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 9866 Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 9867 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 9926 Query 69358 CCCAGATTTTGCTGATTA 69375 || ||||| | |||||| Sbjct 9927 CCAAGATTCTTTTGATTA 9944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686812040309160