Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq904 84.2 3e-11 seq2 82.4 9e-11 >seq904 Length=34060 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| ||||||| ||||| || | || || |||||||| | || |||||| Sbjct 10991 GAAAGACCACAACACATGTTGATGCGTGTTTCTATTGGAATTCATGGTTATGATATTGAT 10932 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334 | | | || || || | |||||| | | ||| || | ||| |||| ||||| Sbjct 10931 GCAGCTATTGAAACTTATAATTTAATGTCCGAGAAATATTTT-ACTCATGCAAGTCCAAC 10873 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 | || |||||||||||||||||||| |||||||| || ||||| Sbjct 10872 TTTGTTTAATGCTGGTACACCAAGACCACAAATGTCAAGCTGCTT 10828 >seq2 Length=211661 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || |||| ||| ||||||||||||||| | ||| || |||| | || Sbjct 205169 AGTCCCTTGCATTCGAAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATC 205110 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||| |||||||| || || | || ||||| |||||| || || ||||| ||||| Sbjct 205109 ---TTCATTTGCTGAACGTCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGG 205053 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||| ||| | || | |||| | ||||| |||| | |||||||| | || | Sbjct 205052 AGCTTTC-GCGTCAATCTTTTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTT 204994 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGA 94938 ||||||| || || ||||| || || ||| Sbjct 204993 CCAACGAACTAATTTCTCGAGATGAAGGA 204965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583178640425560