Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2177 181 1e-40 seq157 172 6e-38 seq1319 147 2e-30 seq188 104 3e-17 seq34 96.9 4e-15 seq97 89.7 6e-13 seq364 87.8 2e-12 seq2 84.2 2e-11 seq1895 82.4 9e-11 >seq2177 Length=17275 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || ||||| ||||| |||||||| || ||| | Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| | | || | |||||||| || || ||||| || |||||||| ||| Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 4548 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| |||||||||||| | || |||| |||||| || | || ||||| Sbjct 4549 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 4608 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 ||||||| ||||| |||||||| || ||| | ||||| || ||||| || Sbjct 4609 ATCCAAAAAGAATCAACTCTTCACCTCGTCCTCCGTCTCCGTGGTGGTCA 4658 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || |||||||| |||||||| || || || | || || ||||| Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | | | || | |||||||| || |||||||| || || ||||||||| Sbjct 4033 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 4092 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| |||||||| ||||| ||||||| || ||||| | ||||| ||| Sbjct 4093 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 4152 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||||||||||||||| || | |||||||| ||||| Sbjct 4153 ATTCAAAAAGAATCCACTCTTCATCTCGTTCTCCGTCTTCGTGGTGG 4199 Score = 176 bits (194), Expect = 5e-39 Identities = 181/234 (77%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 || || ||||||||||| || || || |||||||| ||||| || || ||||| ||||| Sbjct 3739 ACAATCATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAA 3798 Query 27460 TCAGGTGATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 || || | |||| | || || || || |||||||| ||||| || |||||||| || Sbjct 3799 TCTTCCGACACTATTGACCAAGTT-AAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCC 3857 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGA 27578 ||||||||| ||||| ||||| ||||| || ||||| || || | |||||||| |||| Sbjct 3858 AGACCAGCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGA 3917 Query 27579 CTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| | ||||| || || |||||||||||||| | || |||||||| || Sbjct 3918 TTATAACATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 3971 >seq157 Length=142614 Score = 172 bits (190), Expect = 6e-38 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || ||||| || || ||||| ||||| |||||||| | Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 27466 GATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | | || || ||| | || ||||| || ||||| || ||||||||||| || Sbjct 37463 GATACCATAGACCAAGTTAAAG-CAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCA 37521 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || | || || |||||||| ||| | || |||| |||||| || | || ||||| Sbjct 37522 GCAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAA 37581 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | | ||||| ||||| ||||| ||||| || | |||||||| ||||| ||| Sbjct 37582 TATTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGTCAA 37633 Score = 156 bits (172), Expect = 5e-33 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| ||||| || || || ||||| ||||| || ||||| | Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 27466 GATAGCATTG--CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| ||||| ||| || || || || ||||| || ||||| |||||||||||||| | Sbjct 36551 GATACCATTGATCAAGTT--AAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATC 36608 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 | || || |||| || |||||||| ||| | || |||| ||||| | |||| |||| Sbjct 36609 AACAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATA 36668 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||| ||||| ||||| ||||| || | ||| | | ||||| Sbjct 36669 ATATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGG 36717 Score = 134 bits (148), Expect = 2e-26 Identities = 155/207 (75%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 27410 AAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATA 27469 |||| || |||||||| || ||||| || || ||||||||||| || ||||| ||||| Sbjct 37179 AAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGATA 37238 Query 27470 GCATTG--CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 ||| | ||| || || || || ||||| || ||||| || || || ||||| || || Sbjct 37239 CCATAGATCAAGTT--AAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACA 37296 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 || | || || || ||||| ||| | || |||| ||||| || | ||||||||| | Sbjct 37297 ACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATAT 37356 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||||||||| ||||| ||||| || Sbjct 37357 TCAAAAGGAATCAACTCTCCATCTCGT 37383 >seq1319 Length=24104 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| |||||||| || |||||||||||||| || ||||| Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 27466 GATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| | || || || || || ||||| ||||| || || ||||| || || || Sbjct 16668 GATACCATTGACCAAGTT-AAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCA 16726 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || | || ||||| ||||| ||| | || |||| |||||| | |||| || || Sbjct 16727 GCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAA 16786 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| || || ||||| ||||| || | ||| | | ||||| Sbjct 16787 TATCCAAAAAGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGG 16834 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || ||||| || |||||||||||||| ||||| || | Sbjct 16836 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 16895 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| | | | ||| | || ||||| ||||| || || || |||||||| || Sbjct 16896 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 16955 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 || | | ||||||||||| || || Sbjct 16956 CAAAGATTGATTTTTGCTGGCAAACA 16981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||||||||| ||||| || | || || |||||||| || || || |||| ||| Sbjct 16482 GGTATTCCTCCAGATCAGCAACGCTTGATCTTCGCTGGTAAACAGCTGGAAGATGGACGT 16541 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | | ||||||||| ||||||| || || |||||||| || || | |||||| | Sbjct 16542 ACTTTGTCCGACTATAATATCCAAAAAGAGTCAACTCTTCACCTTGTTCTCCGTCTTAGA 16601 Query 27628 GGTGG 27632 ||||| Sbjct 16602 GGTGG 16606 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| || | Sbjct 16294 ATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACTATCACTCTTGAAGTTGAATCTTCT 16353 Query 27466 GATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 || | ||||| | || | ||||| ||||| || ||||| || || || Sbjct 16354 GACACCATTGACCAAGTCAAAGGC-AAAATCCAAGACAAAGAAGGTAT 16400 >seq188 Length=104369 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || || || |||||| | || ||||| | Sbjct 83063 ATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGC 83122 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || | |||||||| || || || ||||| || || || || Sbjct 83123 GATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAA 83182 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||||||||| || | || |||| ||| | || | || || ||| Sbjct 83183 CAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGATTACAAT 83242 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || | || | || | ||| | |||||||| Sbjct 83243 ATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 83289 >seq34 Length=176868 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||| || ||||| || || || || || || || || || | ||||| || |||| Sbjct 50958 GCAGATATTTGTGAAAACACTAACTGGAAAAACAATAACATTGGAGGTGACTTCGAGTGA 50899 Query 27468 TAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 || |||| |||| || || | ||| ||| | ||||| || ||||||||||| || || | Sbjct 50898 TACAATTGACAAACTTAAAAG-TAAGATTAATGACAAAGAAGGAATTCCTCCTGATCAAC 50840 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | || || ||||||||||| | ||| | || || | |||||| | |||| ||| || Sbjct 50839 AACGCCTTATTTTTGCTGGCATACAATTAGAAGACGGACGTACCTTGTCAGATTATCATA 50780 Query 27587 TCCAAAAGGAATCCACTCTTCATCT 27611 |||| || || | ||| ||||||| Sbjct 50779 TCCACAAAGAGTGCACATTTCATCT 50755 >seq97 Length=146771 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| | ||||| || || || ||||| || || | || | ||||| ||||| | Sbjct 24226 ATGCAGGTATTTGTAAAAACACTAACCGGAAAAACGGTAACCTTGGAGGTAGAGTCGTCT 24285 Query 27466 GATAGCATT-GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| || | || || || || || || |||||||| ||||||||||| | Sbjct 24286 GATACCATCAGCCTAGTTAAATGC-AAGATCCAAGACAAGGAAGGAATTCCTCCTAATAG 24344 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | ||||||||||| | ||| | || ||||| |||||| | || ||||| Sbjct 24345 TCAACGTTTTATTTTTGCTGGAAGACAATTAGAAGATGAGCGTACCTTGAGTGATTATAA 24404 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| || || ||| ||| ||| ||||| || || ||||| Sbjct 24405 TATCCAGAAAGAGAGCACACTTTCTCTCATCTTGGAACTACGTGGTGG 24452 >seq364 Length=140482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || || | |||| ||||| || || | ||||| || || ||| || || |||| || Sbjct 21174 TAAAAGGGAAATTTTTGTGAAAACAATGACCGGAAAAACAGTTATCCTAGATTTTGATTC 21115 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 | | || | |||| | | || |||| | || | || || || |||||||| || Sbjct 21114 AAGCGACACTATTGATATGATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGA 21055 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||| ||| | |||||||||||||||||| | ||||||| || || |||| || Sbjct 21054 CCAGCAACGTATTATTTTTGCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTA 20995 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | |||| || || || | ||||| || | | || || ||||| Sbjct 20994 TAATATTCAAAGAGAGTCTACGTTGCATCTTGTACTTAGACTACGTGGTGG 20944 >seq2 Length=211661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 64702 TCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGG 64761 || || |||| | | ||||| | ||| |||||| ||| |||||||| ||||||||||| Sbjct 205111 TCTTCATTTGCTGAACGTCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGA 205052 Query 64762 TCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCG 64821 | ||| || || || ||| |||| || | || |||||||||| | | ||||| Sbjct 205051 GCTTTCGCGTCAATCTTTTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCC 204992 Query 64822 AACGAGCTGATCTCTCGGGACGAGGG 64847 ||||| || || ||||| || || || Sbjct 204991 AACGAACTAATTTCTCGAGATGAAGG 204966 >seq1895 Length=14547 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || || ||||| ||||| || || | | ||||| || ||| | |||| ||||| | Sbjct 4020 ATTATACAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCC 4079 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||||| || | | |||| | |||||| || || || || | ||||||| | Sbjct 4080 TCTGATACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAAT 4139 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||| | || ||||||||||| ||||| || ||| | | ||| | || | ||| Sbjct 4140 CAGCAACGTTTGATCTTTGCTGGTAAACAACTGGAAGATAAACATACTTTGACACATTAT 4199 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| | | |||| ||||||||||| || | ||||| | ||||| Sbjct 4200 AATATTAGGGATAAATCAACTCTTCATCTCGTGCTCCGTCTAAGAGGTGG 4249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570230064651280