Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2177 116 2e-21 seq188 114 8e-21 seq1319 111 1e-19 seq157 111 1e-19 seq34 84.2 1e-11 >seq2177 Length=17275 Score = 116 bits (128), Expect = 2e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | ||| ||||| ||| |||||||||||||||||||| Sbjct 3971 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAG 3912 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||||||||||||||| || || || || | ||| || ||||| || || Sbjct 3911 AGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 3852 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| || |||||| ||| ||||| |||||| | | ||| ||||| || | Sbjct 3851 ATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTTGGT-CAATAGTGTCGGAAGATTCAA 3794 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || ||||| | ||||| || || || |||||| Sbjct 3793 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 3744 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||| || || ||| |||||||| || || || ||| Sbjct 4427 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 4368 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || ||||||||||||||||| || || | ||| || || || || || Sbjct 4367 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 4308 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||||||| ||||| ||| || || || ||| || Sbjct 4307 ATACCTTCTTTGTCTTGGATCTTTGCTTTTACTTGAT-CGATGGTATCGGAAGACTCAAC 4249 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || | ||||| |||||||| ||||| Sbjct 4248 TTCCAAAGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| |||||| || |||||||| || || || ||| Sbjct 4199 CCACCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 4140 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || |||||||||||||| || || || | ||| || ||||| || || Sbjct 4139 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 4080 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||||| ||| ||| ||| ||||| || | | || || || | ||| | Sbjct 4079 ATACCCTCCTTATCT-TGAATTTTGGTTTTTACTTGGT-CGATGGTATCCGAGGACTCTA 4022 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || ||||| ||||| | ||| || || || || ||||| Sbjct 4021 CGTCCAAGGTGATGGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||| ||||||||||| ||||| || || | ||||| | ||| ||||| || || Sbjct 4619 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 4560 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--G 34633 || ||||| || || || || || | ||||| || ||| ||| ||| |||||||| | Sbjct 4559 ATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT-TGAATTTTGGTTTTAACCTG 4501 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| || || || || || | ||| ||||| ||||| || | ||||| | Sbjct 4500 AT-CAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTA 4442 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 4441 CAAAAATTTGCAT 4429 >seq188 Length=104369 Score = 114 bits (126), Expect = 8e-21 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||| || ||||| ||||||| || | ||||| | |||||||| |||||| Sbjct 83253 TCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAAT 83194 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 |||||||| ||||| ||||| || | ||| || || ||| ||| |||| ||| || | Sbjct 83193 ATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCT-TGAATTTTTTCTTTGACTTT 83135 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || || || || || ||||| | || || |||||||| || | ||||| || Sbjct 83134 ATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAAC 83075 Query 34695 AAAAATCTGCATGTT 34709 |||||| |||||||| Sbjct 83074 AAAAATTTGCATGTT 83060 >seq1319 Length=24104 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||| | ||||||||| ||| ||||| || || |||||||| Sbjct 16834 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGAC 16775 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||||||||| || || || || || ||||| || Sbjct 16774 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 16715 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| || | |||||| | | ||| || ||| | ||| | Sbjct 16714 ATGCCTTCTTTGTCT-TGAATCTTCGCTTTAACTTGGT-CAATGGTATCTGAGGACTCTA 16657 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 16656 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq157 Length=142614 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| || |||||||| ||||||||||| Sbjct 36717 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 36658 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| || || ||||| || ||||| || || || Sbjct 36657 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 36598 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||| ||| ||| |||| |||||| ||| ||| || || | | ||| | Sbjct 36597 ATTCCTTCCTTATCT-TGAATCTTTGCTTTAACTTGAT-CAATGGTATCATTGGACTCGA 36540 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| || || | || || || || || ||||| Sbjct 36539 CTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||||||| || |||||||| |||||||| || Sbjct 37629 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 37570 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| || || || || || || || || || || Sbjct 37569 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 37510 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| |||||| | |||||| | | | | || || | ||| | Sbjct 37509 ATACCTTCCTTATCTTGAATCTTT-GCTTTAACTTGGTCTA-TGGTATCAGAGGACTCAA 37452 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||||||||| | || || || ||||| ||||| Sbjct 37451 CTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | || | ||||||||| ||||||||||| ||||| || || Sbjct 37401 CCACCTCTTAAGCGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 37342 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||||||| || || || || ||||| || || || Sbjct 37341 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 37282 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| ||| |||| |||||| ||| || || || | ||| | Sbjct 37281 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGAT-CTATGGTATCAGAGGACTCGA 37224 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAAT 34700 |||| | || || ||||||||||| | || || || ||||| Sbjct 37223 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAAT 37181 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| | || | ||| ||||| ||| || |||||||| ||||| || Sbjct 36489 CCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGAT 36430 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | | || ||||||| | ||||| |||||||| ||||| || ||||| ||||| || Sbjct 36429 AAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATCCGGAGGA 36370 Query 34600 ACTCC 34604 | ||| Sbjct 36369 ATTCC 36365 >seq34 Length=176868 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34510 GTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCG 34569 |||| ||| || || || | ||||||||| | || || ||||||| | |||| | || Sbjct 50764 GTGCACTCTTTGTGGATATGATAATCTGACAAGGTACGTCCGTCTTCTAATTGTATGCCA 50823 Query 34570 GCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTT 34629 ||||| || | || ||||| || || || | ||| || ||||| | ||||| |||| Sbjct 50824 GCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTCTTTGTCATTAATCTTAC-TTTT 50882 Query 34630 AACGATAA-AATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACG 34687 || | |||||| || ||| || || |||| ||||| ||||| || |||| | Sbjct 50883 AAGTTTGTCAATTGTATCACTCGAAGTC-ACCTCCAATGTTATTGTTTTTCCAGTTAGTG 50941 Query 34688 TTTTCACAAAAATCTGC 34704 |||||||||| |||||| Sbjct 50942 TTTTCACAAATATCTGC 50958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314686374741677