Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq188 158 1e-33 seq2177 141 8e-29 seq1319 136 3e-27 seq157 107 2e-18 >seq188 Length=104369 Score = 158 bits (174), Expect = 1e-33 Identities = 191/256 (75%), Gaps = 13/256 (5%) Strand=Plus/Plus Query 26963 CAATAAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTC 27022 ||||||||||||| || || ||||| || ||||| ||||| || || || || | Sbjct 83045 CAATAAATTTTTT----TAAAC---ATGCAAATTTTTGTTAAAACACTTACTGGTAAAAC 83097 Query 27023 TATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGA 27082 |||||| | ||||| ||| ||| | || || | |||||| ||||||||||||| Sbjct 83098 CATTACTTTAGAAGTTGAAAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGA 83157 Query 27083 CAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||||| || || || |||||||| |||||||||| || || ||||| || ||||| Sbjct 83158 TAAAGAAGGAATCCCCCCGGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGA 83217 Query 27143 ---CAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||| || ||||||||||||| |||||||| || || || ||||| ||||| | Sbjct 83218 TGGACGTTC-AC--TTTCCGATTACAATATTCAAAAAGAATCAACATTACACTTGGTACT 83274 Query 27200 GCGTTTGCGGGGTGGC 27215 ||||| || |||||| Sbjct 83275 TCGTTTACGCGGTGGC 83290 >seq2177 Length=17275 Score = 141 bits (156), Expect = 8e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || ||||| ||| | || || |||||||| ||| | || Sbjct 3744 CATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTC 3803 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| || ||| ||||||||||||||||||||| || || || || || Sbjct 3804 CGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCA 3863 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||| ||||||||| | |||||| | ||| | || ||||| || Sbjct 3864 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAA 3923 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||||||||| ||||| || Sbjct 3924 CATTCAAAAAGAGTCAAC 3941 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | |||||| | ||||| || | ||| Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| || |||||||||||||| || || || ||||| Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| |||||| | || || | ||| |||| || ||||| Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 |||||||| ||||| || | |||||||| | ||| | || ||||| || ||| | | Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGTGCTTCGTCTTCGTGGTGGTAT-GCAA--ATT 4437 Query 27228 TTTGTAA 27234 ||||||| Sbjct 4438 TTTGTAA 4444 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || ||| | ||||| ||||| || ||| | || Sbjct 4429 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 4488 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| ||| ||| ||||||||||| ||||| || || || || ||||| Sbjct 4489 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 4548 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || ||||||||||| || || |||| ||||| ||| Sbjct 4549 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 4608 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||| || || || Sbjct 4609 ATCCAAAAAGAATCAAC 4625 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || |||||||| | || || | || || || | || Sbjct 3973 ATGCAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 4032 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||||||||||| || || || || || || || || Sbjct 4033 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 4092 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||| | || || | ||| ||||||| ||||| Sbjct 4093 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 4152 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | ||| | ||| | || ||||| || Sbjct 4153 ATTCAAAAAGAATCCACTCTTCATCTCGTTCTCCGTCTTCGTGGTGGTAT 4202 >seq1319 Length=24104 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| || |||||||||||||||| || | || Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| || ||| || |||||||||||||||||||| || || ||||| Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 16727 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| |||||||||||||| | ||| | || |||||||| Sbjct 16728 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 16787 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| || | ||| | || | ||||| | ||||| || Sbjct 16788 ATCCAAAAAGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGTAT 16837 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || ||||| || |||||||||||||||| ||| | || Sbjct 16836 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 16895 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| ||||| ||| ||||||||||||||||| || || || |||||| Sbjct 16896 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 16955 Query 27108 CAGCGTTTAATATACGCCGGCAAACA 27133 || | || || | || |||||||| Sbjct 16956 CAAAGATTGATTTTTGCTGGCAAACA 16981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || ||||| ||||| ||||||||| |||| ||||||||||| ||| | || Sbjct 16293 CATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACTATCACTCTTGAAGTTGAATCTTC 16352 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| | ||||| |||||| ||||| |||||||||||||| || Sbjct 16353 TGACACCATTGACCAAGTCAAAGGCAAAATCCAAGACAAAGAAGGTAT 16400 >seq157 Length=142614 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| || | ||||| |||||||| || | || Sbjct 37403 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 37462 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| |||||||| || ||||| || || || ||||| Sbjct 37463 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 37522 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || |||||||||||||| || || | || ||||| || Sbjct 37523 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 37582 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || | ||| | || | ||| | |||||||| Sbjct 37583 ATTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGG 37629 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || || || || | ||||| |||||||| || |||| Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGA---GTCC 36547 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || | ||||| || ||| ||| |||||||| || ||||| || || || ||| Sbjct 36548 AATGATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGAT 36607 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| || ||||| | ||| || |||||||||||||| | || | || ||||| Sbjct 36608 CAACAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTAT 36667 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || | ||| | || | ||||| | ||||| || Sbjct 36668 AATATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 36720 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053 || || || || || || ||||| || | |||||||||||||| || | || || | Sbjct 37181 ATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGATACC 37240 Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 || || || ||| ||| |||||||| || ||||| || || || |||||||| || Sbjct 37241 ATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAACGC 37300 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 || || | |||||| |||||||||||||| | || | || || || || |||||| Sbjct 37301 TTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATTCAA 37360 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || | ||| | || | || || | ||||| || Sbjct 37361 AAGGAATCAACTCTCCATCTCGTACTTCGCTTAAGAGGTGGTAT 37404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434857136306880