Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq188 120 2e-22 seq1319 116 3e-21 seq2177 111 1e-19 seq157 89.7 4e-13 >seq188 Length=104369 Score = 120 bits (132), Expect = 2e-22 Identities = 172/239 (72%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||||||||| ||||| |||||||| ||| ||||| | || || ||||| Sbjct 83060 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 83119 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | ||| ||| |||| |||||| ||||||| || |||||||| | || Sbjct 83120 AGCGA-----TACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCC 83174 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG--CAGCTTGTC 27959 ||| || ||||| ||||| ||||| || ||||| || || || | ||| || ||| || Sbjct 83175 CGGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCA-CTT-TC 83232 Query 27960 CGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||||| || |||||||| || || || ||||| | ||||| || || |||| Sbjct 83233 CGATTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCG 83291 >seq1319 Length=24104 Score = 116 bits (128), Expect = 3e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || |||||||| || ||| |||||| |||| || || | | Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || || | || ||| || || ||||||||||| |||| ||| | Sbjct 16668 GATACCATTGACCAA--GTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATC 16725 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || |||||||| ||||||||||| || | ||| | |||||| ||||||| Sbjct 16726 AGCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACA 16785 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | |||||||||||| ||| | ||| | || | ||||| Sbjct 16786 ATATCCAAAAAGAGTCAACTCTCCATCTCGTGCTCCGTTT 16825 >seq2177 Length=17275 Score = 111 bits (122), Expect = 1e-19 Identities = 167/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||| ||||| ||| ||||| | || || || || Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 27850 GACGATGTACAATCGGTCAAACAAAA---AATAGCC--GACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| |||| |||| || | || |||||||||||| |||| | Sbjct 4261 GA-----TACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAG 4315 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | ||||| ||||| |||||| | || || | ||| | | | || || | Sbjct 4316 ATCAGCAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACT 4375 Query 27965 ACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || ||||||||| | ||||| |||||||| | ||| | ||||| || Sbjct 4376 ACAATATTCAAAAAGAGTCAACACTT--CATTTGGTGCTTCGTCTTCGTGGTGG 4427 >seq157 Length=142614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| || ||||| ||||| |||||||||||||| ||||| |||| ||| ||||| || || Sbjct 36376 GGATCAACAACGCTTAATCTTTGCCGGAAAACAGTTGGAAGACGGACGTAGCTTATCTGA 36435 Query 27963 TTACAACATCCAAAAAGAG 27981 ||||||||| || |||||| Sbjct 36436 TTACAACATTCAGAAAGAG 36454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355813525524363