Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2177 159 8e-34 seq1319 125 2e-23 seq34 113 1e-19 seq97 100 7e-16 seq364 91.5 3e-13 >seq2177 Length=17275 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || || |||||||| ||||||||||| ||||||||||| | ||||| Sbjct 3965 CGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTA 3906 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| || || ||||| ||||| ||||| ||||| ||||| || |||| |||| Sbjct 3905 CGGCCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCT 3846 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || || ||| ||| || | || || ||||| || |||||| || || Sbjct 3845 TCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGG 3786 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || || || || || | ||||| Sbjct 3785 GTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| || |||||||||||||||||||||| ||| || | |||||| Sbjct 4640 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 4581 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || ||||| || | ||||| || || ||||| | || || || || Sbjct 4580 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 4521 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || | || ||||| ||||| ||| ||||| || || |||||| Sbjct 4520 TGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTC 4461 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | ||||| Sbjct 4460 TTACCAGTAAGTGTTTTTACAAAAATTTGCAT 4429 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || ||||||||||| || || || || | |||||| Sbjct 4422 ACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGT 4363 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || || || || ||||| || || ||||| || || || |||| || Sbjct 4362 TCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACC 4303 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||||||| ||| || | |||||||| || || ||||| || | Sbjct 4302 TTCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAA 4243 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| |||||||| || ||||| | ||||| Sbjct 4242 AGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || ||||||||||| |||||||| || || || || | |||||| Sbjct 4194 ACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGT 4135 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || || || || ||||| || || ||||| ||||| || || | || Sbjct 4134 TCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACC 4075 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || || || ||| || | |||||||| || ||| || || || | Sbjct 4074 CTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAA 4015 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| |||||||| || | ||||| Sbjct 4014 GGTGATGGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 >seq1319 Length=24104 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| |||||||||||||| || ||||| | | ||| | ||||||| Sbjct 16819 AGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 16760 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || ||||| | |||||| || || || |||| ||||| ||||| Sbjct 16759 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCT 16700 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || | || ||||| || ||| || || || ||||| || || Sbjct 16699 TGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTT 16640 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 16639 TTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 Score = 105 bits (116), Expect = 2e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| |||||||||||||| ||||| || | | || | ||||||| Sbjct 16591 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 16532 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||| || || |||||||| | |||||| || || ||||||| Sbjct 16531 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAA 16486 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 ||| ||||| || || || | | |||||| || ||||| | ||||| ||||| || || Sbjct 16982 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 16923 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 |||| || || | ||| || || ||||| |||||| || ||||| || || || || Sbjct 16922 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 16863 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||||||||| | |||||| Sbjct 16862 GGTGAGGGTCTTTACAAAAATCTGCAT 16836 >seq34 Length=176868 Score = 113 bits (124), Expect = 1e-19 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| ||||| || | ||| |||| ||| ||||||| ||||| | |||||| | | Sbjct 50736 TCCACGTAGTCTAAGTATAAGATGAAATGTGCACTCTTTGTGGATATGATAATCTGACAA 50795 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||| ||||| | || |||| || || |||||||||||||| |||||||||| Sbjct 50796 GGTACGTCCGTCTTCTAATTGTATGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAAT 50855 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCT 211068 |||||| ||||| | ||||| ||| | || || || || ||| | || |||| Sbjct 50856 TCCTTCTTTGTCATTAATCTTACTTTTAAGTTTGTCAATTGTATCACTCGAAGTC-ACCT 50914 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 | | || || || ||||| || || || || ||||| | |||| Sbjct 50915 CCAATGTTATTGTTTTTCCAGTTAGTGTTTTCACAAATATCTGC 50958 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||||| |||| ||| ||||||||||||| | |||||| | | ||| Sbjct 46725 ACGTAGTCTAACTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGACAAGGT 46784 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||| | ||| |||| || || ||||| |||||||| ||||| | ||| Sbjct 46785 ACGTCCGTCTTCTAATTGCGTGCCAGCAAAAATAAGACGTTGTTGATCAGGGAAAGTTCC 46844 Query 211013 TTCCTTGTC 211021 ||| ||||| Sbjct 46845 TTCTTTGTC 46853 >seq97 Length=146771 Score = 100 bits (110), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 210914 AAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCT 210972 ||| ||| |||||| ||||| |||||||| | ||||| | || |||||| | || Sbjct 24426 AAGTGTGCTCTCTTTCTGGATATTATAATCACTCAAGGTACGCTC-ATCTTCTAATTGTC 24368 Query 210973 TGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTT 211032 | || || || |||| ||||| | |||||||| |||||||||||| |||||||| Sbjct 24367 TTCCAGCAAAAATAAAACGTTGACTATTAGGAGGAATTCCTTCCTTGTCTTGGATCTTGC 24308 Query 211033 GTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGA 211092 ||| || |||||| ||||| || ||||| | || | ||| ||||| || | Sbjct 24307 ATTTAACTAGGCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTA 24248 Query 211093 GAGTCTTTACAAACACCTGCAT 211114 | || |||||||| |||||||| Sbjct 24247 GTGTTTTTACAAATACCTGCAT 24226 >seq364 Length=140482 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| || ||||| || | || |||||| |||| || |||||||| | | || Sbjct 20949 ACGTAGTCTAAGTACAAGATGCAACGTAGACTCTCTTTGAATATTATAATCTGATAAAGT 21008 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||| |||| ||||| || || || |||| ||||| ||||||||||||| || Sbjct 21009 TTTTCCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCC 21068 Query 211013 TTCCTTGTCCTGGATCTT 211030 ||| || | || || ||| Sbjct 21069 TTCTTTTTTCTCGACCTT 21086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158984636925185