Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2177 109 5e-19 seq188 100 2e-16 >seq2177 Length=17275 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||||||||| ||||| || || | ||| |||||| | || || Sbjct 4410 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 4351 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| ||||| || || || || ||||| ||||| || | ||| | | |||||||| Sbjct 4350 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 4291 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | |||||| ||||| || |||| || || |||| Sbjct 4290 GATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 4231 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || ||||||||||| |||||||| Sbjct 4230 TCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||||||||| || |||||||| | || || || |||| ||||| |||||||| || || Sbjct 3936 CTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCAAGTTGTTTGCCAGCGAA 3877 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 |||||||| |||||||| | ||| | | |||||||| ||| ||| || || | | | Sbjct 3876 AATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTT 3818 Query 39213 CGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | || || ||| || || || || | ||||| | ||||| || || ||||||| Sbjct 3817 GGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAA 3758 Query 39272 CAAAGATTTGCAT 39284 | ||||||||||| Sbjct 3757 CGAAGATTTGCAT 3745 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||||| ||||| || |||| ||| |||||| | || ||||| || Sbjct 4176 ATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTG 4117 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || ||||| |||||||| | ||| | | ||| || || ||| ||| Sbjct 4116 TTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCT-TGAATTT 4058 Query 39201 CTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| | | | | | ||||| ||||| ||||||| ||||| |||| || | Sbjct 4057 TGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGG 3998 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || ||||||||||| Sbjct 3997 TGAGCGTCTTTACGAAGATTTGCAT 3973 >seq188 Length=104369 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| || | ||| || | ||||| |||| || |||||||| ||||| ||||||| Sbjct 83290 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 83231 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||||| ||| | || || | |||||| || |||||||| | ||| || || || | ||| Sbjct 83230 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 83171 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||| || ||||| | ||||| | | | |||||||| || || Sbjct 83170 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 83111 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || | || || |||| || || || ||||||||||| |||||||| |||| Sbjct 83110 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA 83058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429486605804597