Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2177 143 2e-29 seq942 143 2e-29 seq188 140 2e-28 seq1319 125 5e-24 seq157 111 1e-19 seq38 111 1e-19 seq34 98.7 7e-16 seq2849 89.7 3e-13 >seq2177 Length=17275 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||||| || ||||| || ||||| || |||||||| || | Sbjct 3745 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 3804 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | ||| ||||||| ||||||||||| | || ||||| || Sbjct 3805 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 3864 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || ||||||||||| ||||||| || || | ||||| ||| Sbjct 3865 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAAC 3924 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| || | ||| |||| Sbjct 3925 ATTCAAAAAGAGTCAACTCTTCATCTAGT 3953 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| ||||| |||||||| || ||| | |||||||| || | Sbjct 4201 ATGCAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 4260 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | ||||| ||| || |||||||||||| | || |||||||| Sbjct 4261 GATACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAG 4320 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| |||||||| || || | ||| || | || ||||| Sbjct 4321 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 4380 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| ||| | ||||| || Sbjct 4381 ATTCAAAAAGAGTCAACACTTCATTTGGT 4409 >seq942 Length=78137 Score = 143 bits (158), Expect = 2e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23622 CGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA 23681 ||||||||| | || |||||||| || || | ||||| || | | || || |||| Sbjct 25256 CGTTAAAACATTAACTGGAAAAACTATAACAATTGAAGTCGAGTTTAGTGATACAATTGA 25315 Query 23682 AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAAT 23741 ||||||| ||||||| |||| ||||||||| |||| ||||||||||| | ||||| Sbjct 25316 TCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAAT 25375 Query 23742 ATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGA 23801 ||||| || || ||||| ||||| | || |||||| | |||||||| ||| | || Sbjct 25376 TTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGATGA 25435 Query 23802 GTCCACATTACATTTAGTTTTAAGGTT 23828 |||||| |||||||||| ||||| || Sbjct 25436 GTCCACGCTACATTTAGTATTAAGATT 25462 >seq188 Length=104369 Score = 140 bits (154), Expect = 2e-28 Identities = 163/217 (75%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||| ||||| |||||||| || || || ||||| || ||| | |||||||| Sbjct 83057 TTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAA 83116 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | || || | || | | | ||| |||||||| || |||||||| | || || Sbjct 83117 AGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCG 83176 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCG 23782 |||||||| |||||||||||||| || ||||| | ||||| | ||| |||||| || Sbjct 83177 GATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCG 83234 Query 23783 ATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||| || |||||||| || |||||||| || || Sbjct 83235 ATTACAATATTCAAAAAGAATCAACATTACACTTGGT 83271 >seq1319 Length=24104 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || || || || ||||| || ||||| ||||| || ||| | Sbjct 16608 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 16667 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| || ||| ||||||||||| | || || ||||| Sbjct 16668 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 16727 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || |||||||| |||||| ||||||| | ||| || || |||||||| Sbjct 16728 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 16787 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||||||||| || Sbjct 16788 ATCCAAAAAGAGTCAAC 16804 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || ||||| || ||||| |||||||| || | Sbjct 16836 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 16895 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || ||||| | | || ||| ||| |||||||||||| | || ||||||||| Sbjct 16896 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 16955 Query 23731 CAGCGTTTAATATTTGCCGGCAAACA 23756 || | || || ||||| |||||||| Sbjct 16956 CAAAGATTGATTTTTGCTGGCAAACA 16981 >seq157 Length=142614 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23617 ATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACT 23676 |||||||| || |||||||| || ||||| || ||||| ||||| || ||| | || || Sbjct 37181 ATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGATACC 37240 Query 23677 GTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGT 23736 | || | | ||| ||| ||| || || |||||| | || ||||||||||| || Sbjct 37241 ATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAACGC 37300 Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796 || || || ||||| |||||| ||||||| | || |||||| || || || || ||| Sbjct 37301 TTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATTCAA 37360 Query 23797 AAAGAGTCCAC 23807 || || || || Sbjct 37361 AAGGAATCAAC 37371 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || ||||| || || || ||||| || |||| Sbjct 36491 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 36550 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| ||| ||| || || ||||| | || ||||||||| Sbjct 36551 GATACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 36610 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || ||||| || || || |||||| ||||||| | || ||||| ||||| || Sbjct 36611 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAAT 36670 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 36671 ATTCAAAAAGAATCAAC 36687 >seq38 Length=163822 Score = 111 bits (122), Expect = 1e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23709 AGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGA 23768 ||||||| |||| ||||||||||| ||||| | | ||||| |||||||| ||||| || Sbjct 74513 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 74572 Query 23769 ACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTT 23828 |||||||||| ||||| || |||||| | || || || |||||||||| ||||| || Sbjct 74573 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 74632 Query 23829 GCGAGGAGG 23837 |||| || Sbjct 74633 AAGAGGTGG 74641 >seq34 Length=176868 Score = 98.7 bits (108), Expect = 7e-16 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG-G 23671 |||||| || || ||||| || || |||||||| || || | || || |||| | | | Sbjct 50958 GCAGATATTTGTGAAAACACTAACTGGAAAAACAATAACATTGGAGGT-GACTTCGAGTG 50900 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 | || |||| | | | ||| || ||| |||||||||||| | || || ||||||| Sbjct 50899 ATACAATTGACAAACTTAAAAGTAAGATTAATGACAAAGAAGGAATTCCTCCTGATCAAC 50840 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | || | || ||||| |||| |||| | ||||||| ||| || || ||||| | | Sbjct 50839 AACGCCTTATTTTTGCTGGCATACAATTAGAAGACGGACGTACCTTGTCAGATTATCATA 50780 Query 23792 TACAAAAAGAGTCCACATTACAT 23814 | || ||||||| |||||| ||| Sbjct 50779 TCCACAAAGAGTGCACATTTCAT 50757 >seq2849 Length=14001 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 || || ||||||||||| | || || ||||| || || || ||| | | | | || Sbjct 3973 CAAATATTCGTTAAAACATTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 4032 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || || | | ||||| |||||||| || |||||| | |||| | ||||||||| Sbjct 4033 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAAGGATACCTCTAGATCAACAA 4092 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 | ||||| ||||| || | ||| ||||| | || || ||| |||||| ||| Sbjct 4093 AGATTAATTTTTGCTGGTATGTCACTTGAAGATGGCCGTACGTTATCGGATTACGGTATA 4152 Query 23794 CAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||||| |||||| ||||| |||| || || Sbjct 4153 AAAAAAGAATCCACAATACATATAGTATTGAG 4184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337963177444652