Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2177 140 8e-28 seq157 123 6e-23 seq1319 105 2e-17 seq188 102 2e-16 >seq2177 Length=17275 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || ||||||||||||||||| | |||||| |||| | || Sbjct 4194 ACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGT 4135 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || |||||||| || || ||||| ||||| || || ||||| Sbjct 4134 TCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACC 4075 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| || || || || |||||||| || |||| || ||||| || Sbjct 4074 CTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAA 4015 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || | || |||| ||| | |||||| Sbjct 4014 GGTGATGGTTTTGCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| ||||||||||||| || ||||| | | ||| | |||||| Sbjct 4640 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 4581 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | ||||| || || || || ||||| || || ||| Sbjct 4580 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 4521 Query 225622 TGGATCTTTTGCTTCACAGCT--TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 || | ||||| || | || || ||||| || || | ||| || || | || |||| Sbjct 4520 TGAA--TTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 4463 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||||||| || | |||||| Sbjct 4462 TCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 4429 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || || |||||||| | |||||| || | | || Sbjct 4422 ACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGT 4363 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || || ||||| || || ||||| || || || |||||||| Sbjct 4362 TCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACC 4303 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||||||| || || |||||||| || || | || || || || Sbjct 4302 TTCTTTGTCTTGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAA 4243 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | |||||| | || | |||||| Sbjct 4242 AGTAATGGTTTTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 >seq157 Length=142614 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || |||||||| ||||||||||| | ||| ||||| | ||||| Sbjct 37623 CGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTA 37564 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | || || ||||||||||| | ||||| || || || ||||||||| Sbjct 37563 CGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 37504 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| |||||| || || || ||||| || |||| || || || | Sbjct 37503 TCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGG 37444 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | || || | ||| | |||||| Sbjct 37443 GTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 Score = 116 bits (128), Expect = 9e-21 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||||||||| | ||| ||||| | |||||| | |||||| Sbjct 36702 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGGCCATCT 36643 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || ||||||||||| | |||||||| || || ||||| |||||||| ||| Sbjct 36642 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 36583 Query 225622 TGGATCTTTTGCTT 225635 || ||| ||||||| Sbjct 36582 TGAATC-TTTGCTT 36570 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||| ||||| | ||| || || | ||||| | |||||| Sbjct 37386 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 37327 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || |||||||| | |||||||| || || || ||||||||||| ||| Sbjct 37326 TCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCT 37267 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| || || || ||||| || |||| || || || | || || || Sbjct 37266 TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 37207 Query 225682 TTGCCCGT 225689 || || || Sbjct 37206 TTACCGGT 37199 >seq1319 Length=24104 Score = 105 bits (116), Expect = 2e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||| || |||||||||| ||| || |||| |||||| | |||||| Sbjct 16591 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 16532 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| || ||||||||||| | ||||| || || || ||||||||| Sbjct 16531 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 16481 >seq188 Length=104369 Score = 102 bits (112), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT--TCTCCCATCTTCTAGCTGCTTCC 225574 || ||||||||||| | ||||||||||| ||||| | |||||||||| ||| || | Sbjct 83259 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTTCTAACTGTTTAC 83202 Query 225575 CAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCT 225634 |||| || || | |||||||| || || || || ||||| || ||||| || |||| | Sbjct 83201 CAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTT 83142 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | || |||||||| || |||| || ||||| || || || || || || | | Sbjct 83141 TGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTG 83082 Query 225695 TTTTTATGAACACTTGCATTTT 225716 |||| | || | |||||| || Sbjct 83081 TTTTAACAAAAATTTGCATGTT 83060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192359017500686