Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq188 100 2e-16 seq1319 96.9 3e-15 >seq188 Length=104369 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGG--AATCTT 101087 |||| ||| || |||||||||||||||||||||||||||| | ||| | ||||| Sbjct 83271 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTT 83214 Query 101088 CCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGG 101147 | || ||||| || ||| |||| | | |||||| || ||| | |||||||| || Sbjct 83213 CTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTT 83154 Query 101148 CAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGT 101205 |||||||| ||| || | | | || || | || || ||| | ||||| || Sbjct 83153 GAATTTTTTCTTTGACTTTATCGATGGTATCGCT--ACTTTCAACTTCTAAAGTAATGGT 83096 Query 101206 TTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAATATATTTTTT 101256 ||| || || | |||||||| |||||||||||| ||| || | |||| || Sbjct 83095 TTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA-AAAAAATTTATT 83046 >seq1319 Length=24104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 |||||| |||||||| ||||||||||| | || || ||||||||||||||| || Sbjct 16805 AGTTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACC 16746 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTT 101160 ||| | || | | ||| || || ||| | |||||||||||| ||| || ||| Sbjct 16745 GGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTT 16686 Query 101161 CACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 || | | | | || |||| |||| | ||| | ||||||||||| || || | || Sbjct 16685 AACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGT 16626 Query 101221 TTTAATAAAAATTTGCAT 101238 |||| ||||||||||| Sbjct 16625 CTTAACGAAAATTTGCAT 16608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409604536801671