Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 230 2e-55 >seq2 Length=211661 Score = 230 bits (254), Expect = 2e-55 Identities = 326/452 (72%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| ||| |||||| || || ||||| || ||||| |||||||| ||||| |||| ||| Sbjct 204644 AACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAA 204703 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||| |||||||||||||| ||||| || || || |||| | | || Sbjct 204704 ACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAG 204763 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTTAA 4425 || || | |||| |||||||||||||| ||||| | |||| | ||||| ||| | Sbjct 204764 TGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC-GTTCA 204822 Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 | |||||||| | || |||| || | ||| ||||| ||||||||||| || || |||| Sbjct 204823 TACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTT 204882 Query 4486 CTGTGATTATATCTTTTAT--TTTATCTTT-AGATGGTTTATTTAC-TAAGTATCCAAAC 4541 | | || ||| ||| || ||| | || || | || || | | ||| || Sbjct 204883 CCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCGTGCATGAAGATGAGTG----AAT 204938 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 || | ||| ||||||||||||||||| ||||| |||| ||| |||||||| ||||| Sbjct 204939 AAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAA 204998 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 |||||||| ||||| | ||||| || || | |||||| || | || || | |||||| Sbjct 204999 GTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAA 205058 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTAC 4693 |||||||| ||||| || |||||||||||||| Sbjct 205059 AAGAATATTCCTTCAACAGCGGCAAACGCTAC 205090 Score = 192 bits (212), Expect = 5e-44 Identities = 220/295 (75%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 4801 TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 ||| | |||| || | ||||||| || || | ||| |||||||| ||||| |||| Sbjct 205277 TTTGAGATGGCTCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATAT 205336 Query 4861 TTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTAC 4920 |||| || ||||||||||| ||||| ||||| ||||||| | ||| ||||| |||| Sbjct 205337 TTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTAC 205396 Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| | ||| ||||| ||||| || || ||||| || ||||||||| || ||||||| Sbjct 205397 TAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAGGCTGCAAAGAAGGCCAAAA 205456 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT---TTTCCAGTGGGGCAAATCTT 5037 | ||||| |||||| | | ||| ||| |||||||| | ||| | || ||| | Sbjct 205457 CGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCT 205516 Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 | | | |||||||| |||||||||||||| || ||||| || ||||||||||| Sbjct 205517 TGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACAT 205571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426990948607577