Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1915 444 8e-120 seq2 197 2e-45 seq904 113 6e-20 >seq1915 Length=14346 Score = 444 bits (492), Expect = 8e-120 Identities = 696/985 (71%), Gaps = 8/985 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA-CACATCAATG 76577 |||||||||||| ||||||||||| ||||||||| |||| |||| || || || Sbjct 10457 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAAT-AAAC 10515 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | | ||| | | ||||| ||||||||| ||||| | | ||| || ||| || Sbjct 10516 TCCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 10575 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | || || | Sbjct 10576 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 10635 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| || |||| Sbjct 10636 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 10695 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAG 76817 | ||||| | |||||| || || ||||||||||| | ||||| |||||||| || || | Sbjct 10696 CTTGATCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTTG 10755 Query 76818 ATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGC 76877 | |||||||||||||| ||||||| ||| |||||||| ||| ||| | | Sbjct 10756 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 10815 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || ||||| | ||||| || | || || |||||| || |||||||| |||| Sbjct 10816 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 10875 Query 76938 CTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 |||| |||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 10876 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 10934 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || ||||||||||| || |||||||| ||||| || | ||||| || | |||||||| Sbjct 10935 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 10994 Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 ||||||||| | ||||| ||||| | ||||| || || || || ||||| | |||| Sbjct 10995 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 11054 Query 77117 TGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 77176 || || || || || || || | |||| || | || ||| |||| | |||| Sbjct 11055 TGTTGGGGACGCTCAGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 11114 Query 77177 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTG 77236 ||||| |||||||| || ||| | | ||||| || ||||| || ||||| ||||| Sbjct 11115 TTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTTT 11174 Query 77237 TCCTTATATTTGGTAACAATATCCATGACAGTGGT-AGAAATAATTGGAGATCGTATTCC 77295 ||| || || | ||||||| || | | | |||||| |||| | ||| | || Sbjct 11175 TCCGAATTGTTCATCACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 11233 Query 77296 ATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGT 77355 |||| ||||| | ||| ||| | | ||||| | || | | ||| | |||||| || Sbjct 11234 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 11293 Query 77356 TTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTG 77415 ||| || || ||||| || || || || | |||||| || | |||||||| ||||||| Sbjct 11294 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 11353 Query 77416 TGTAGTGCAGGT-GGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTC 77474 || || || | || || ||||||| || ||| |||||||||| | ||| |||| | Sbjct 11354 AGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACAC 11412 Query 77475 CGTTATATAGCCCTTGAATAACTTT 77499 | | ||| | ||| ||| || || Sbjct 11413 CTTGATAAACTCCTGAAATGACCTT 11437 Score = 179 bits (198), Expect = 5e-40 Identities = 284/403 (70%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||| ||||||||||||||||| |||| | || | ||| |||||| || || ||||| Sbjct 9420 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 9479 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||||| | | ||||||| ||||| ||||| | ||| || ||||| ||||| ||||| Sbjct 9480 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 9539 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAA 75886 | |||||| ||||| | |||| ||||||| ||||| | ||| | | |||||| Sbjct 9540 GAGCAATAATGAATTTCGTACACCA--TGTTCTGATATTTTTTGTTTCAACAAATTCCAA 9597 Query 75887 TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCA 75946 ||||| | ||| | || |||||| ||| | ||||||||||| ||| || ||| | | Sbjct 9598 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 9657 Query 75947 TATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCT 76006 |||||| | ||| | || || | ||| |||| | |||||| || || ||| Sbjct 9658 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 9717 Query 76007 AACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC--TTGCGCTTCAAGAC 76064 || ||||| | ||| ||||| || || || | |||||| || || |||||| | |||| Sbjct 9718 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGA- 9776 Query 76065 TATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCC 76107 |||||| || | | | | || || | |||||||| ||| Sbjct 9777 -ATCAAATTGAATACGCATAGCAAGGAAAGTATCTGCTAATCC 9818 >seq2 Length=211661 Score = 197 bits (218), Expect = 2e-45 Identities = 363/523 (69%), Gaps = 23/523 (4%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||||||||| |||||| || || ||| ||||| || || ||||| ||||| |||| Sbjct 204641 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 204700 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATA-AAtttttttAAATC 46444 || || |||||||||||||| ||||| |||||| |||||| | | | Sbjct 204701 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 204759 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT-TTCACAA 46503 | | | | | | |||||| || || ||||| ||||| ||||||| | ||| | Sbjct 204760 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 204818 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || || | || || |||| || || || | ||| |||||||| || || || Sbjct 204819 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 204878 Query 46564 GCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA-----TGCATCAA-ATGT 46617 || |||| ||| || | | ||| |||| ||| |||| ||||| || ||| Sbjct 204879 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCATGAAGATGA 204932 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 204933 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 204992 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 ||||| || | || ||||| | ||| | || || | |||||| || | |||||||| | Sbjct 204993 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 205052 Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--G 46795 |||||||||||||| ||||| ||||| || || || ||||| | || | || || | Sbjct 205053 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG--ACGTTCAGCAAATGAAG 205110 Query 46796 CATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 || |||| |||||| | |||||||||| || ||||| Sbjct 205111 ATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTT 205153 Score = 167 bits (184), Expect = 3e-36 Identities = 208/282 (74%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| Sbjct 205318 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 205377 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 | ||| || || || ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 205378 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 205437 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT---TTCATCGGTAGTCAGTTTA 47097 || ||||| || ||||| || || |||||| |||| ||||||| || |||||| Sbjct 205438 GCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTA---AGTTTA 205494 Query 47098 ---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 | ||| ||||| ||||| || || | || ||||| ||| | ||||| ||||| || Sbjct 205495 TACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCT 205554 Query 47155 TCTGCTTTTTTATACATATTCCATATAT-CACGATATTGGAT 47195 || || ||||| ||||| | ||| || | ||| ||||| ||| Sbjct 205555 TCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 205596 >seq904 Length=34060 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 |||||||| |||| | | | ||| ||||| |||||||| | || || ||| Sbjct 10804 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 10863 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 |||||||| || ||| ||||||||| || |||| || || | || ||| || |||||| Sbjct 10864 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 10923 Query 77063 ATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122 ||| |||| || ||||| | ||||||||| | || |||||||||||||| || || Sbjct 10924 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 10983 Query 77123 GGTCGTTCTACA 77134 |||| ||| ||| Sbjct 10984 GGTCTTTCAACA 10995 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 75721 TTGAAATTCTCCAGACAATAC---TCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 ||||||||| ||| ||||| |||| || |||||||| || || |||||||| | Sbjct 9119 TTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGTTCAAA 9175 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 ||||||||||||| | ||| ||| || || ||||| ||||| ||||| | ||| || Sbjct 9176 GCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAACAA 9235 Query 75838 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 75897 | ||||| | |||| | ||||| || ||||| | | | ||| ||||| |||| Sbjct 9236 AGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGATC 9295 Query 75898 TGATGGT 75904 ||| ||| Sbjct 9296 TGAAGGT 9302 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 |||||||||||||| || ||||||||||||||| || |||||||| ||| || Sbjct 9687 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 9746 Query 76187 ATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 76245 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 9747 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 9806 Query 76246 -TTTTCCATCTATCACAAACATATTAAG----AGCTATAGATGCTAGATTACAAACGGCT 76300 ||||| || | | |||| ||| || | || || |||| ||||||||||||| Sbjct 9807 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 9866 Query 76301 ACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 || |||| | | ||||| | || || || |||| |||| || | ||||| Sbjct 9867 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 9926 Query 76361 CCAAGATTTTGTTGGTT 76377 |||||||| | ||| || Sbjct 9927 CCAAGATTCTTTTGATT 9943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712833974278080