Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1319 140 7e-28 seq157 122 2e-22 seq2177 118 2e-21 seq188 98.7 2e-15 >seq1319 Length=24104 Score = 140 bits (154), Expect = 7e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| |||||||||||||| |||||||| | || || | ||||| Sbjct 16820 GAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATCTGACAAGGTACGTCCATC 16761 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| | ||| ||||| ||||| |||| | ||||| |||| | || ||||| || | Sbjct 16760 TTCCAATTGTTTACCGGCAAAGATCAAGCGT-TGCTGATCCGGGGGAATGCCTTCTTTGT 16702 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||| || || | | | ||||| |||||||||||||||||||| Sbjct 16701 CTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAG 16642 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| ||||| | ||||| Sbjct 16641 TTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 >seq157 Length=142614 Score = 122 bits (134), Expect = 2e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| || || ||||| || || || || | |||||| | |||||| Sbjct 37386 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 37327 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | ||| ||||||||||| |||| | || || || | | ||| |||||||| || Sbjct 37326 TCCAATTGTTTACCGGCGAAGATCAAGCGT-TGTTGATCTGGGGGGATACCTTCCTTATC 37268 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| ||| ||| || |||| | | || || ||| |||||||||||||| || Sbjct 37267 TTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGT 37208 Query 152072 TTTGCCCGTGAGAGTCTTCACGAA 152095 ||| || ||||| ||||| ||||| Sbjct 37207 TTTACCGGTGAGGGTCTTGACGAA 37184 Score = 107 bits (118), Expect = 4e-18 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| || || ||||| | ||||| | ||||| Sbjct 36703 GAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGGCCATC 36644 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| | ||| || |||||||| |||| | || || || | | ||||||||||| | Sbjct 36643 TTCCAATTGTTTACCAGCGAAGATTAAGCGT-TGTTGATCTGGAGGAATTCCTTCCTTAT 36585 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAAGAGTAAT 152068 ||||||| ||| ||| || || | | | || || | ||| |||||||| ||||| Sbjct 36584 CTTGAATCTTTGCTTTAACTTGATCAATGGTATCATTGGA--CTCGACTTCAAGGGTAAT 36527 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || ||||| ||||| | ||||| Sbjct 36526 GGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 36491 >seq2177 Length=17275 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || ||||||||||| ||||||||||| ||||| ||||| | | || | Sbjct 3962 AGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGG 3903 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || ||| || ||||| ||||| | |||||||| | | |||||||| Sbjct 3902 CCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCT 3843 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||||||| ||| || || | |||| ||| || |||||||| || Sbjct 3842 TTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTG 3783 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || ||||||| ||||| Sbjct 3782 ATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 3745 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||||||||| || |||||||| || ||||| |||| | |||| ||||| Sbjct 4185 GAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATC 4126 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || ||||| || || | |||||||| | | ||| || ||||| || Sbjct 4125 CTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATC 4066 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| ||| || || | | | || || |||||| || | || || || Sbjct 4065 TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGT 4006 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| ||||| ||||||| ||||| Sbjct 4005 TTTGCCGGTGAGCGTCTTTACGAAGATTTGCAT 3973 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || ||||||||||| || ||||| || | | |||| ||||| Sbjct 4412 AGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCC 4353 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || || | ||||| || | | || ||||| || ||| Sbjct 4352 TCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCT 4293 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| ||| || || | | | || ||| ||| ||||| | |||||| ||| Sbjct 4292 TGGATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTT 4233 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| || || || | ||||| Sbjct 4232 TTTCCAGTGAGAGTTTTAACAAAAATTTGCAT 4201 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || |||||||| || |||||||||||||| ||||| | | ||| | Sbjct 4647 GAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACG 4588 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || || ||||| || | | ||||| || | | ||| || || Sbjct 4587 ACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTC 4528 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||||||||| ||| || || | | | || || || || ||||| || Sbjct 4527 TTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGT 4468 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || || || || || | ||||| Sbjct 4467 AATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 4429 >seq188 Length=104369 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC--CCATCTTCTAGGCTTTTCC 151965 || || |||||||| || |||||||||| ||||| | |||||||||| ||| | Sbjct 83259 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTTCTAACTGTTTAC 83202 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || || || | | || || |||| | ||||||||| || ||||||||||||| || Sbjct 83201 CAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTT 83142 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 |||| | || | | | || ||| || ||||| | |||||| ||||| || || || | Sbjct 83141 TGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTG 83082 Query 152086 TCTTCACGAAGACCTGCATTTT 152107 | || || || | ||||| || Sbjct 83081 TTTTAACAAAAATTTGCATGTT 83060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153654206665499