Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 188 7e-43 >seq2 Length=211661 Score = 188 bits (208), Expect = 7e-43 Identities = 345/499 (69%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || ||||||| || ||||||||| || || ||| |||| || |||||||| |||| Sbjct 204637 TACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTAC 204696 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--T 23318 | | ||| || |||||||||||||| ||||| | |||||| | | || | Sbjct 204697 CTTGTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA-ATTTTGCT 204755 Query 23319 ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC 23378 || | | | || ||| | ||||| ||||||||||||||||||| ||| |||| Sbjct 204756 CCACCA-AGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATT 204814 Query 23379 ATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 ||| ||||| |||| || ||||| | || || ||| ||| || ||| || | Sbjct 204815 CGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGT 204874 Query 23439 AACAGCATC---TTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATA 23495 ||| || || | |||| || ||| | || || |||| | | | || Sbjct 204875 AACCGCTTCCGCTATAATAGCTTCTACAGTTT-TTGTTGG--AGGTCGTGCATGAAGATG 204931 Query 23496 CTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 | || || | |||||||||||||||||| | |||||||| | | ||| | ||| || Sbjct 204932 AGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTT 204991 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGA 23615 ||||| |||||||||||||| | ||||| ||| || | |||||| |||| || || | Sbjct 204992 GGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGC 205051 Query 23616 TCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC 23675 ||| |||||||| || || |||||||| ||||| || ||||||||| | |||||| | Sbjct 205052 TCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGA 205111 Query 23676 ATTATAATCAGAAATCCAT 23694 | | ||| ||||||||| Sbjct 205112 TTCCTTATCGGAAATCCAT 205130 Score = 141 bits (156), Expect = 1e-28 Identities = 171/231 (74%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 |||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||| Sbjct 205318 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 205377 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 | | ||| || |||||| ||| | || |||||||||| || ||||||||||| Sbjct 205378 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 205437 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT--- 23979 || |||||||| || | ||| | ||||| | |||| ||| | | ||| ||| Sbjct 205438 GCTGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCA-TCGTTAAGTTTATA 205496 Query 23980 -TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | ||||||||| ||||| || || | |||||||| ||||| |||||||| Sbjct 205497 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAA 205547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521414541896600