Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq157 102 6e-17 seq2177 96.9 2e-15 seq1319 95.1 9e-15 >seq157 Length=142614 Score = 102 bits (112), Expect = 6e-17 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| || || || || |||||||| || |||||||||| ||| | ||||||||| Sbjct 37557 TCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTA 37498 Query 44243 TCCGTTATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 || ||||| ||||| || || || |||||| || | ||| || || || | |||| Sbjct 37497 TCTTGAATCTT-TGCTTTAACTTGGTC-TATGGTATCAGAGGACTCAACTTCAAGGGTAA 37440 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||||||||| ||||| |||||||| Sbjct 37439 TTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 37403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| || || ||||| |||||||| || || ||||||| || | ||||||||| Sbjct 37329 TCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTA 37270 Query 44243 TCCGTTATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 || ||||| ||||| || || || |||||| || | ||| || || || | |||| Sbjct 37269 TCTTGAATCTT-TGCTTTAACTTGATC-TATGGTATCAGAGGACTCGACTTCAAGAGTAA 37212 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333 | || || || ||||||||||| ||||| |||| Sbjct 37211 TTGTTTTACCGGTGAGGGTCTTGACGAAAATTT 37179 >seq2177 Length=17275 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||| ||||| ||||| ||||| | ||| || |||| || Sbjct 3953 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAGAGGGTACGGCCGTCTTCA 3894 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || || || || | ||| ||||| |||| || | ||||| || || Sbjct 3893 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 3834 Query 44249 ATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||||| || || || || ||||||| ||||| || || | || || |||| Sbjct 3833 ATTTT-TGCTTTAACTTGGTCA-ATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCT 3776 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| || ||||| || ||||||||||||||||| Sbjct 3775 TTCCGGTAAGGGTTTTAACGAAGATTTGCATGAT 3742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || || ||||||||||| ||||| | || || | || ||| Sbjct 4637 ACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCC 4578 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| || || || |||||||| |||||||||| ||| | ||| | |||| | | Sbjct 4577 AATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCT-CTTTATCTTG 4519 Query 44249 ATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 | || | || || || | | ||||| || | ||||| ||||| | |||||||||| Sbjct 4518 AATTTTGGTTTTAACCTGAT-CAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCT 4460 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || || || || || |||||||| Sbjct 4459 TACCAGTAAGTGTTTTTACAAAAATTTGCAT 4429 >seq1319 Length=24104 Score = 95.1 bits (104), Expect = 9e-15 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | | | ||| || || || || ||| |||||||| |||||||| Sbjct 16838 CATACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCTTTTTGGATATTGTAATC 16779 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || |||| || || |||||||||||||| || |||||||| | Sbjct 16778 TGACAAGGTA-CGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCG 16720 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA--TGTTCCTATGGTGTCGGCGGA 44283 || | ||||| || || |||||| |||| || || | | ||||| || | ||| Sbjct 16719 GGGGAATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGT-CAATGGTATCTGAGGA 16662 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || || || || || ||||| ||||| |||||||| Sbjct 16661 CTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 16608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359940958580973