Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2177 159 8e-34 seq1319 150 4e-31 seq188 150 4e-31 seq157 141 2e-28 seq34 96.9 8e-15 seq364 95.1 3e-14 seq81 87.8 4e-12 >seq2177 Length=17275 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || ||||| || |||||||| || || ||| || ||| Sbjct 3748 CAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGAC 3807 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||| ||||| |||||||||||||| || || ||||||||| Sbjct 3808 ACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAA 3867 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| || ||||| || | || || | ||||||||| | Sbjct 3868 CGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGCCGTACCCTCTCAGATTATAACATT 3927 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| ||||| || ||||| || Sbjct 3928 CAAAAAGAGTCAACTCTTCATCTAGT 3953 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||||||||| |||||||| || || | || || || || || Sbjct 4204 CAAATTTTTGTTAAAACTCTCACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCCGAT 4263 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| |||||| || ||||||||||| || || || || |||||| Sbjct 4264 ACCATCGATCAAGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAGCAA 4323 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| || || |||||| | || ||| | || || || | Sbjct 4324 CGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAATATT 4383 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| |||||||| ||| Sbjct 4384 CAAAAAGAGTCAACACTTCAT 4404 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || || ||||| ||||| ||||| ||| || || Sbjct 4432 CAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCTGAT 4491 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| || ||||| || ||||| || |||||||| || |||||| Sbjct 4492 ACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAGCAA 4551 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | |||||||| | |||||| | ||||||||| || Sbjct 4552 CGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAACATC 4611 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || || || || Sbjct 4612 CAAAAAGAATCAACTCTTCACCTCGT 4637 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || ||||| |||||| | || || || ||| || Sbjct 3976 CAAATCTTCGTAAAGACGCTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGGAT 4035 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| || ||||| || || || || ||||| || ||||||||| Sbjct 4036 ACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGCAA 4095 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| || || |||||| | || ||| |||| || || | Sbjct 4096 CGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATATT 4155 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || ||||| ||| Sbjct 4156 CAAAAAGAATCCACTCTTCATCTCGTT 4182 >seq1319 Length=24104 Score = 150 bits (166), Expect = 4e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || ||||| || || || || || || |||||| Sbjct 16611 CAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCAGAT 16670 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| ||||||||||| || || ||||| |||||| Sbjct 16671 ACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAGCAA 16730 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| ||||| | ||||||||| | || |||| | ||||| || | Sbjct 16731 CGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTAC-CTTGTCAGATTACAATAT 16789 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||| ||||| || ||||| || Sbjct 16790 CCAAAAAGAGTCAACTCTCCATCTCGT 16816 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| || ||||| || || || || || ||| || || Sbjct 16839 CAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCTGAT 16898 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | ||||| ||||||||| ||||||||||| |||||||| || || ||| Sbjct 16899 ACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAACAA 16958 Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067 || | || || || || |||||| Sbjct 16959 AGATTGATTTTTGCTGGCAAACAG 16982 >seq188 Length=104369 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || | || || ||||| || Sbjct 83066 CAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCGAT 83125 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||| ||||| || |||||||||||||| ||||| || ||| Sbjct 83126 ACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAACAA 83185 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | ||||||||| | | ||| ||||||| || | Sbjct 83186 CGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGATTACAATATT 83245 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||||||| | || |||| Sbjct 83246 CAAAAAGAATCAACATTACA-CTTG 83269 >seq157 Length=142614 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || ||||| || || || ||| || Sbjct 37406 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTGAT 37465 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| || ||||| || |||||| Sbjct 37466 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCAA 37525 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 37526 CGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAATATT 37585 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 37586 CAAAAAGAATCTACTCTCCATCTCGT 37611 Score = 131 bits (144), Expect = 4e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||||||||| || || ||||| || ||||| || || || || || || ||| || | Sbjct 37179 AAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGATA 37238 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || | || ||| ||||||||| || || ||||| ||||| || || || |||| Sbjct 37239 CCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAAC 37298 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 | | ||||||||||| ||||| | |||||||| | ||| | | || ||||| | | Sbjct 37299 GCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATTC 37358 Query 178105 AAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || Sbjct 37359 AAAAGGAATCAACTCTCCATCTCGT 37383 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||| || ||||| || || || | || Sbjct 36494 CAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATGAT 36553 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || |||||||| ||||| || || ||| Sbjct 36554 ACCATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 36613 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 36614 CGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTGTCAGATTATAATATT 36673 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 36674 CAAAAAGAATCAACTCTCCATCTCGT 36699 >seq34 Length=176868 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 || || || |||||||| || || |||||||| || || | |||||| | || Sbjct 50957 CAGATATTTGTGAAAACACTAACTGGAAAAACAATAACATTGGAGGTG---ACTTCGAGT 50901 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || || || || | ||| |||||| | |||||||||||||| ||||| || || Sbjct 50900 GATACAATTGACAAACTTAAAAGTAAGATTAATGACAAAGAAGGAATTCCTCCTGATCAA 50841 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 ||||| ||||| || || || | ||| | ||||| ||| | || |||| | |||||| | Sbjct 50840 CAACGCCTTATTTTTGCTGGCATACAATTAGAAGACGGACGTAC-CTTGTCAGATTATCA 50782 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| ||||| | ||| | |||||| | | ||||| Sbjct 50781 TATCCACAAAGAGTGCACATTTCATCTTATACTTAGACT 50743 >seq364 Length=140482 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAG 177981 ||||||| |||||||| | || |||||||| | | ||| || | || |||| | Sbjct 21166 AAATTTTTGTGAAAACAATGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGC---G 21110 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || | | ||| ||| | || | |||||||| || ||||| ||||||| Sbjct 21109 ACACTATTGATATGATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGC 21050 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| |||| || || || || || | || ||||||| ||| | | |||||||| Sbjct 21049 AACGTATTATTTTTGCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTATAATA 20990 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | |||| ||| || || |||||||||| | ||||| Sbjct 20989 TTCAAAGAGAGTCTACGTTGCATCTTGTACTTAGACT 20953 >seq81 Length=89240 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| |||| |||||||| || |||||||| || || || || ||| ||| | | | Sbjct 50095 CAAGTTTTTGTGAAAACGCTATTCGGAAAAACCATAACGCTTGATGTG-AAATCAAATAA 50153 Query 177984 -ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || | | || ||||||||||| | ||||||||||| || ||| | |||||||| Sbjct 50154 TACTATTGCTCAGGTTAAACAAAAGATCGAAGACAAAGAAGGTATTCCTACTGACCAGCA 50213 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGAC-TCTTG-CCGATTATAAC 178100 ||| |||| | || || | ||| | || |||| | || ||||| | |||||| Sbjct 50214 ACGTATTATTTATGCTGGTACACAATTAGAGGATG--ATTACATCTTGTCAGATTATGGT 50271 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || | || |||||||| |||||||||| | ||||| Sbjct 50272 ATCTATAAGGAATCAACTTTGCATCTTGTACTTAGACT 50309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203557400399186