Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq717 187 3e-42 >seq717 Length=48811 Score = 187 bits (206), Expect = 3e-42 Identities = 312/443 (70%), Gaps = 20/443 (5%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| ||||| ||||||||||| || || || ||||| || | || | || | Sbjct 5101 TTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAAAT 5042 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAA---ATATTTTAGAGTACCCCAGTTCGGCGA 16790 |||| |||||||||||||| ||||| | | ||| | || ||| | | | Sbjct 5041 CCATAAAATCAAAAGGATTCT---CTGAATTATACAATTTTGCTCCACCAAGTGCCACTA 4985 Query 16791 TTAATCTATCCGCTACAAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTATA 16849 ||||||||| ||||||||||| ||||||| |||||| ||||| |||||| || || Sbjct 4984 ATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC-GTTCATACCAATT 4926 Query 16850 AGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 | | || || | ||||| || |||||| ||| ||||| |||||||||| ||| Sbjct 4925 AAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATA 4866 Query 16910 ATA----CTAGCAACTCGTTCCTCGGACG--GTGTATGTTTAAGATGTTTAAACATCAGA 16963 ||| ||| || | || | ||| | ||| | | |||||| | || | ||| Sbjct 4865 ATAGCTTCTA-CAGTT--TTTGTTGGAGGTCGTGCACG---AAGATGAGTGAATAAGAGA 4812 Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 ||||| ||||| ||||| ||||| || |||| || |||||||| ||||| || || Sbjct 4811 CATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAAT 4752 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| |||||| ||||||||||||||| || | ||||| | |||||||||||| Sbjct 4751 CCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAAT 4692 Query 17084 ATACCCTCGACGGATGCAAACGC 17106 || || || || | |||||||| Sbjct 4691 ATTCCTTCAACAGCGGCAAACGC 4669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 199/290 (69%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| | ||| || | ||| ||||||||| || || || || || || |||||| Sbjct 4462 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 4403 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC--CACGTAGAATCGTTCCGCTA 17351 ||||| ||||| |||| ||||| | ||||| ||||| || || || |||||| ||| Sbjct 4402 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTAC-TA-AAACGTTCCACTA 4345 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 |||||| || || || || || ||||| || || ||||| | || ||| || Sbjct 4344 AATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGA 4285 Query 17412 ATTTTTCGTC--CGGT--GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACT 17467 ||||||| || || | || || | ||| || || | ||| ||||| | || ||| Sbjct 4284 ATTTTTCTTCATCGTTAAGTTTATACTC-CCAATCATTCATATCCTTGGAAAGGTCAACT 4226 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || || |||||||| ||| | |||||||| ||||| | ||| || Sbjct 4225 TCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517476151849800