Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq148 134 1e-26 >seq148 Length=94477 Score = 134 bits (148), Expect = 1e-26 Identities = 177/239 (74%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 101676 TTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACT 101735 |||||| ||||| ||| ||||| ||| || |||| ||| || || ||||| ||||| | Sbjct 50724 TTTTAA-AGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATT 50666 Query 101736 CTCCAGGCACTAGATTA-GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCA 101794 | ||||| |||| | || |||||||||||||| |||||| | || |||||| ||| Sbjct 50665 CACCAGG-ACTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCA 50607 Query 101795 ATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGA-AAG 101853 ||||||||||| || || | || | |||| |||||||||||| || |||| || || Sbjct 50606 ATGTTAAATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAAT 50547 Query 101854 CTTTCC--ATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTT 101910 |||| | || | ||||| ||||| | || | |||||| || || || ||||||| Sbjct 50546 CTTTTCGTATTTGATACATAGAATTGGCAAAACATATGACATGGTGGTAATGCCATTTT 50488 Score = 93.3 bits (102), Expect = 3e-14 Identities = 222/333 (67%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985 ||||||||||| | | || | |||||| | || | |||| || |||| || | Sbjct 50398 ATTCCAAGCACTGAGAATGATTCGTCTATCATTTGGAGTATTTTTAATTTTATCGATGAC 50339 Query 101986 CTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCG---CCCAACACCTTTATATTC 102042 || || | ||| ||||| |||| || | ||||| || | || | | | || || Sbjct 50338 CTCTTGCAGTTGATCAACACCTTTACCAGTGTAATC-CGTATCGCA--ATCAATGTACTC 50282 Query 102043 TGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTC 102102 || || ||||| ||||| || |||||||| ||||| || | ||| ||||| | ||| | Sbjct 50281 AGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCTTTTCTATG 50222 Query 102103 ATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCC 102162 | | |||| |||||| ||| || | ||| ||||| | |||||||| || | || Sbjct 50221 TGATAGCCCAATTTTATCCAAATATTCACGAGAACCATTACCGTCCCAAATATGAATACC 50162 Query 102163 AGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAAC 102222 | | | || | |||||| | ||| ||| | |||||||| || | |||||| | Sbjct 50161 TTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAATAATTCTTCTAT 50102 Query 102223 AACACCTCTCCAAAATACTCTCTTAGTAGTTAA 102255 || | | | | ||| || | |||||| ||||| Sbjct 50101 AATAGCACGCGTAAAAACGCGCTTAGTTGTTAA 50069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361203936489485