Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1702 333 3e-86 seq717 179 4e-40 seq114 96.9 4e-15 >seq1702 Length=19207 Score = 333 bits (368), Expect = 3e-86 Identities = 674/989 (68%), Gaps = 16/989 (2%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 54008 |||||| || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 13577 Query 54009 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 13578 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 13635 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 13636 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 13695 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||| |||| |||||||| ||| || || || | | | || || |||||||||||| Sbjct 13696 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 13755 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || || || | ||||||||||| ||||||||||| | ||||| |||||||| ||||| Sbjct 13756 CCTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTT 13815 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 13816 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 13875 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || ||||| | ||||| || | ||||||| ||| || ||||||||||| ||| Sbjct 13876 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 13935 Query 54368 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 13936 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 13994 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 13995 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 14054 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || || ||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 14055 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 14114 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || || | || | | || |||| | | || ||| |||| | ||| Sbjct 14115 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 14174 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 |||||| |||||||| || ||| | | | || || ||||| || || || ||||| Sbjct 14175 TTTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAAGTTT 14234 Query 54667 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATCGGAGAATGTT 54722 ||| | ||||| | ||| || ||| || ||||| || | | ||| Sbjct 14235 TTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 14290 Query 54723 TCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC-ACTTCACTAAATAGtttt 54781 |||| |||| ||||| | ||| ||| | | || ||||| | || | ||| | |||| Sbjct 14291 TCCCTGTTTTCGGATTTATATAATTATAAAGAT-CTTCAACAACATTGGAAAAAACTTTT 14349 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 || |||||||| || ||||| || || || || | ||| || || | |||||| |||||| Sbjct 14350 TTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGA 14409 Query 54842 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTT 54901 |||| || || | || || |||| || | || | | || ||||| || || | Sbjct 14410 TGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 14469 Query 54902 ACTCCATTATATATTCCTTGGATAACCTT 54930 || || | ||| | |||| || ||||| Sbjct 14470 ACACCTTGATAAACTCCTGAAATGACCTT 14498 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 ||||||||| |||||| ||| |||| ||||| || || || |||| | || | Sbjct 13187 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 13246 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 13247 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 13306 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 || ||||| | ||| || || || || |||| ||||| ||||| ||||||||| Sbjct 13307 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 13366 Query 53870 TCTATAATCGCTTTCCAGAC 53889 || | ||| ||| ||||||| Sbjct 13367 TCAAGAATTGCTGTCCAGAC 13386 >seq717 Length=48811 Score = 179 bits (198), Expect = 4e-40 Identities = 218/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 4468 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4409 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || |||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4408 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4349 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4348 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4289 Query 24576 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 24631 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4288 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4230 Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 4229 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4176 Score = 176 bits (194), Expect = 5e-39 Identities = 322/463 (70%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 ||| || ||||| ||||| | ||||| |||||| | | ||| | Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAAT-TTTGCTCCAC 4997 Query 23951 CAATT--CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT-TTCACA 24007 ||| | || ||| |||||||| || ||||| || |||||| ||||||| | ||| | Sbjct 4996 CAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG 4938 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || || | |||||||| | || | || | |||||||||||| || | || Sbjct 4937 -TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAAC 4879 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAA 24126 ||| || | |||||||| | ||| |||| | ||| | | || || ||| | | Sbjct 4878 CGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTGA 4820 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | | |||||| ||||| || || | || || |||| | ||||| ||||||||||| Sbjct 4819 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 4760 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | ||| ||||| | || | || || | |||||| || ||||| || | ||||| Sbjct 4759 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 4700 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 ||||||| |||||||| || || ||||| || | ||| | ||| Sbjct 4699 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTC 4657 >seq114 Length=70618 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433 |||||||| |||| | | || ||| || || |||||||| | | || || ||| Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 ||||| || || ||| || || ||||| |||| || || | || ||| || || || Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 54494 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 54553 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 54554 GGTCTTTCAAC 54564 ||||||||||| Sbjct 58077 GGTCTTTCAAC 58067 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 59375 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 59316 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 53676 | |||||| | || | | || ||||| | | || | || || | |||||||| Sbjct 59315 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 59256 Query 53677 -TTGTCCAT---CTATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCT 53731 || || || |||| ||||| | |||| ||| || || | ||||||||||||| Sbjct 59255 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 59196 Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 59195 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 59136 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 59135 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 59092 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 53147 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGT 53203 |||||||||||||| ||| ||||| ||| || |||||||| || || || ||| Sbjct 59952 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 59896 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | | ||||| ||||| | ||| ||| || |||||||| ||||| ||||| | | Sbjct 59895 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 59836 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 53323 || ||| ||||| | || ||| ||||| || ||||| | | |||| | ||| Sbjct 59835 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 59776 Query 53324 AGATCCGACGGT 53335 |||| || ||| Sbjct 59775 CGATCTGAAGGT 59764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593641929982800